BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1297.p (492 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrog... 296 1e-81 gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde deh... 174 1e-44 gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogen... 154 2e-38 >gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrogenase (NADP+) [Janthinobacterium sp. Marseille] Length = 490 Score = 296 bits (759), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 169/475 (35%), Positives = 269/475 (56%), Gaps = 11/475 (2%) Query: 12 IAGQWRLGSGEPYATHYPATGEVVATLHAASVADVEEAIAGADLAFRSSGWAHKKAHERA 71 I G W G + + PA G + + + E+AI A AF + A K ERA Sbjct: 21 INGAWVTGKAS-FDVNNPADGSKITDVPNLGAQETEQAIQAAHAAFPAW--AAKTGKERA 77 Query: 72 AVLYRVAQLIRERSEALAQMQRLDNGKPISETRALVASAAATFQFFAAACETLE-ETLTP 130 ++ LI ++ LA + + GKP+ E+R V A+ ++FA + + + + Sbjct: 78 GIMRIWFDLIIANADDLAALMTAEQGKPLIESRGEVIYGASFIEWFAEEAKRVSGDVMAS 137 Query: 131 MRGDNLTMSLYEPMGVVAAITPWNSPIASEAQKMAPALAAGNAVVVKPAEVTPLAALELA 190 D T+++ +P+GV A+ITPWN PIA +K+APA+AAG +V+KPAE TPL+AL +A Sbjct: 138 TWSDKRTVTIKQPIGVCASITPWNFPIAMITRKVAPAIAAGCTIVIKPAEQTPLSALAIA 197 Query: 191 RICIEAGVPAGMISVLPGKGS---VIGDAITRHPLVKRVSFTGGTTTGKHIAHIAADKMM 247 + AG+P G+I+V+ +G + P+V+ VSFTG T G+ + A + Sbjct: 198 ELAHRAGIPPGVINVVTSDSDQSIAVGKVLCSSPIVRHVSFTGSTPVGRILMEQCAPTVK 257 Query: 248 PVSLELGGKSPTMVFEDADVDHAVAGVLYGIFSSSGESCIAGSRLFVARTLYDGFMERLA 307 + LELGG +P +VF+DAD+D AV G L + ++G++C+ +R +V ++YD F+++L Sbjct: 258 KIGLELGGHAPFIVFDDADLDAAVVGALQSKYRNAGQTCVCTNRFYVHESIYDTFVQKLG 317 Query: 308 AAAAALRVGDPADARTQMGPLITARHRQGIERYVELGVAEGGRIRTGGVRPQGAQFERGY 367 A AA ++VG+ + GPLI A+ + +E++V V++G ++ TGG + GY Sbjct: 318 AGAAKIKVGNGVEQGVLQGPLIDAQAVKKVEQHVSDAVSKGAKVITGGKQ----HALGGY 373 Query: 368 YYTPTIIEGVSNQQRICQEEIFGPVLVAMPFDDEDDLIAQANDSVYALAAGIWTRDYKRA 427 +Y PT++ +S I EE FGPV + F ED+ +A AND+ + LA+ ++RD R Sbjct: 374 FYEPTVLSNISPDMLIMHEETFGPVAAVIKFKTEDEAVAAANDTDFGLASYFYSRDIGRV 433 Query: 428 WRIGRAVQAGNVWINTYKQFSISTPFGGWRDSGLGREKGRLGILQYMEQKAMYWG 482 WR+ ++ G V INT + PFGG + SGLGRE + GI +Y+E K + G Sbjct: 434 WRVAEKLEYGMVGINTGLISNEVAPFGGVKQSGLGREGSKYGIEEYLEIKYLCMG 488 >gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde dehydrogenase [Janthinobacterium sp. Marseille] Length = 505 Score = 174 bits (440), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 139/464 (29%), Positives = 224/464 (48%), Gaps = 20/464 (4%) Query: 29 PATGEVVATLHAASVADVEEAIAGADLAFRSSGWAHKKAHERAAVLYRVAQLIRERSEAL 88 PATGE A + AS ADV+ +A A A + A +RA +L++ LI + + L Sbjct: 29 PATGEASAQVVLASDADVQAVVATAKAAAPAW--ADTAPLKRARILFKFKDLIEKHHDDL 86 Query: 89 AQMQRLDNGKPISETRALVASAAATFQFFAAACETLEETLTPMRGDNL-TMSLYEPMGVV 147 A ++GK S+ + V +F + L+ T G + +L +P+GV Sbjct: 87 AAAITREHGKVFSDAKGEVTRGLEVVEFACGVPQLLKTQFTDNIGGGIDNWNLRQPLGVT 146 Query: 148 AAITPWNSPIASEAQKMAPALAAGNAVVVKPAEVTPLAALELARICIEAGVPAGMISVLP 207 A ITP+N P ALA GN ++KP+E P +L +A + +AG+P G+ +VL Sbjct: 147 AGITPFNFPFMVPMWMAPVALATGNTFILKPSERDPSPSLMVAELLQQAGLPDGVFNVLQ 206 Query: 208 GKGSVIGDAITRHPLVKRVSFTGGTTTGKHIAHIAADKM---MPVSLE-LGG-KSPTMVF 262 G + D + +HP VK VSF G T ++I A + P+ ++ LGG K+ +V Sbjct: 207 GDKLAV-DGLLQHPDVKAVSFVGSTPIAEYIYATGAARKGGSYPLRVQALGGAKNHLVVM 265 Query: 263 EDADVDHAVAGVLYGIFSSSGESCIAGSRLFVARTLYDGFMERLAAAAAALRVGDPADAR 322 DA+++ AV ++ + S+GE C+A S + D + L +L+V + +A Sbjct: 266 PDANLEQAVDALIGAAYGSAGERCMAISVAVAVGDIADKLVAALIPRVKSLKVKNGMEAD 325 Query: 323 TQMGPLITARHRQGIERYVELGVAEGGRIRTGGVRPQGAQFERGYYYTPTIIEGVSNQQR 382 +MGP+++A H+ IE Y++ GV G ++ G + A ++G++ + + V+ + Sbjct: 326 AEMGPVVSAAHKAKIEGYIDAGVKAGAKLLVDGRGLKVAGHDKGFFLGGCLFDHVTPEMT 385 Query: 383 ICQEEIFGPVLVAMPFDDEDDLIAQANDSVYALAAGIWTRDYKRAWRIGRAVQAGNVWIN 442 I QEEIFGPVL + + + N + ++T D A R V+ G V IN Sbjct: 386 IYQEEIFGPVLCVLRVPNFAAALELINRHEFGNGVSLFTSDGNTAREFSRRVEVGMVGIN 445 Query: 443 TYKQFSISTP-----FGGWRDSGLGREK--GRLGILQYMEQKAM 479 I P FGGW+ S G G GI Y K++ Sbjct: 446 V----PIPVPMAWHSFGGWKRSMFGDTHAYGEEGIKFYTRYKSI 485 >gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase [Janthinobacterium sp. Marseille] Length = 1242 Score = 154 bits (388), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 129/457 (28%), Positives = 212/457 (46%), Gaps = 33/457 (7%) Query: 33 EVVATLHAASVADVEEAIAGADLAFRSSGWAHKKAHERAAVLYRVAQLIRERSEALAQMQ 92 +VV T+ A A +E A+ A + W K ERAA+L + A L ++ + L + Sbjct: 610 DVVGTVQQADAAVLELALQHATSGINT--WQAKPIAERAAILLQAADLFQQHATELIALL 667 Query: 93 RLDNGKPISETRALVASAAATFQFFAAACETLEETLTPMRGDNLTMSLYEPMGVVAAITP 152 + GK + + A ++++A + +P+G+VA I+P Sbjct: 668 VREAGKTLPNAIGELREAIDFLRYYSAQA--------------IASDANQPLGLVACISP 713 Query: 153 WNSPIASEAQKMAPALAAGNAVVVKPAEVTPLAALELARICIEAGVPAGMISVLPGKGSV 212 WN P++ +++ ALAA N V+ KPAE TPL A ++ +AGVP + LPG G Sbjct: 714 WNFPLSIFTGQVSAALAAANVVLAKPAEQTPLIACRAVQLLHQAGVPENALLFLPGSGET 773 Query: 213 IGDAITRHPLVKRVSFTGGTTTGKHIAH------IAADKMMPVSLELGGKSPTMVFEDAD 266 IG + P V V FTG T + I I+ K +P+ E GG++ +V A Sbjct: 774 IGAQLVTDPRVSAVVFTGSTQVAQSIQRKLVQRSISEGKDIPLIAETGGQNTMIVDSSAL 833 Query: 267 VDHAVAGVLYGIFSSSGESCIAGSRLFVARTLYDGFMERLAAAAAALRVGDPADARTQMG 326 + V V+ F S+G+ C A L + + + ++ L A LR+G P T +G Sbjct: 834 CEQVVRDVISSAFDSAGQRCSALRVLCLQDDIAEQTLQMLHGAMQELRIGRPDHLATDVG 893 Query: 327 PLITARHRQGIERYVELGVAEGGRIRTGGVRPQGAQFERGYYYTPTIIEGVSNQQRICQE 386 P+I A + ++ Y+ A G ++R + G + P IIE + Q Sbjct: 894 PVIDAEAQAHLQAYIRQAQAAGKQVRQLPL-----PVTNGSFVAPCIIEIADINE--LQR 946 Query: 387 EIFGPVLVAMPF--DDEDDLIAQANDSVYALAAGIWTRDYKRAWRIGRAVQAGNVWINTY 444 E+FGPVL + + DD L+ N + + L GI TR + + R Q GN+++N Sbjct: 947 EVFGPVLHVLRYRRDDLPQLLMDINSTGFGLTLGIHTRIDETIDYVVRHAQVGNIYVNRN 1006 Query: 445 KQFSI--STPFGGWRDSGLGREKGRLGILQYMEQKAM 479 ++ PFGG SG G + G L+ ++++++ Sbjct: 1007 IVGAVVGVQPFGGEGLSGTGPKAGGPLYLKRLQRESI 1043 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,201,911 Number of extensions: 52486 Number of successful extensions: 185 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 174 Number of HSP's successfully gapped: 3 Length of query: 492 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 405 Effective length of database: 899,382 Effective search space: 364249710 Effective search space used: 364249710 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)