BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1295.p (571 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980052|ref|YP_001353840.1| acetolactate synthase large sub... 132 4e-32 gi|152981070|ref|YP_001352069.1| glyoxylate carboligase [Janthin... 105 6e-24 gi|152980239|ref|YP_001352089.1| putative oxalyl-CoA decarboxyla... 69 8e-13 >gi|152980052|ref|YP_001353840.1| acetolactate synthase large subunit [Janthinobacterium sp. Marseille] Length = 583 Score = 132 bits (333), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 131/546 (23%), Positives = 232/546 (42%), Gaps = 39/546 (7%) Query: 12 TNPQVTVGCAIAAFLEQCGVKAAFGVISIHNMPILDAFGERGKIRFIPARGEAGGANMAD 71 T ++ V C L + GV+ FG + I DA K + I R E + AD Sbjct: 18 TGAEIVVRC-----LAEEGVEHVFGYPGGAVLYIYDAIFNHSKFQHILVRHEQAAVHAAD 72 Query: 72 AYARTTGGLGVCLTSTGTAAGNAAGAMVEALTAGTPLLHLTGQIETPYLDQSLAYIHEAP 131 AY+R++ +GVCL ++G NA + A P++ ++GQ+ P L E Sbjct: 73 AYSRSSNKIGVCLVTSGPGVTNAVTGLATAYMDSIPMIVISGQV--PSHAIGLDAFQEC- 129 Query: 132 DQLSMLKAISKAAFRIRSVETAISTIKLAVQTALTPPMGPVSVEIPIDI--QAAMISMPT 189 D + + + K F ++ V+ +T+K A A T GPV ++IP DI + P Sbjct: 130 DTVGITRPCVKHNFLVKDVKDLAATMKKAFFIATTGRPGPVLIDIPKDITMHKCVFEYPK 189 Query: 190 NLQPLAIPP-SLPSARALDELAERLLKARRPLLWLGGGA--RHAGPQVQRLL-ALGFGVV 245 ++ + P + + + + LL+A RP+++ GGG +A ++ RL+ LG+ Sbjct: 190 EVEMRSYKPVDKGHSGQIRKAVQLLLQAERPMIYTGGGVILANASEELNRLVDRLGYPCT 249 Query: 246 TSTQGRGIVPEDDARSLGAFNLHKPVE-NF-YQSCDAMLVVGSRLR----GNETLKYELK 299 + G G + +G +H E N Q D M+ +G+R GN K+ Sbjct: 250 NTLMGLGAYKASSDKFVGMPGMHGTYEANMAMQHSDVMIAIGARFDDRVIGNP--KHFSA 307 Query: 300 LPRPLYRVDADPAAEGRCYTSDYFVCGDSALVLGGLADRLAALQVDP------AFMADLK 353 PR + +D DP++ + D + G+ VL L +L A P A+ + Sbjct: 308 TPRKIIHIDIDPSSISKRVKVDIPIVGNVKEVLVELLAQLDAADAKPNSVALSAWWKQIN 367 Query: 354 QARESAVHGLLDG---LGPYGTLVEQLQQAAGRQFNWVRDVTVSNSTWGNRYLRIFDPRA 410 + R+ D + P + + + G F + + W +Y PR Sbjct: 368 EWRKRDCLKFTDSTEVIKPQSVIQKVWEVTKGDAF--ITSDVGQHQMWAAQYYPFNKPRR 425 Query: 411 GVHALGGGIGQGLAMGIGAAIGAAVTQSGKKTFTLAGDGGFILNLGELATAVQEQADMVI 470 +++ GG+G + +G+ A+G + G+ + + ELAT Q I Sbjct: 426 WINS--GGLGT-MGVGLPYAMGVQKANPDATVACITGEASIQMCIQELATCKQYHLTPKI 482 Query: 471 VLMNDQGYGVIKNIQDAQYGGR--RHYVDLHTPDYAALSAALKLRHKRVGDLSQVAAGLD 528 +L+N++ G+++ Q +YG R Y+D PD+ L + ++ + + V L Sbjct: 483 ILLNNRFLGMVRQWQQLEYGSRYSESYMD-SLPDFNKLVESYGHVGMKIENPADVDGALK 541 Query: 529 EALSQQ 534 EA + Sbjct: 542 EAFDMK 547 >gi|152981070|ref|YP_001352069.1| glyoxylate carboligase [Janthinobacterium sp. Marseille] Length = 582 Score = 105 bits (263), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 114/488 (23%), Positives = 206/488 (42%), Gaps = 24/488 (4%) Query: 15 QVTVGCAIAAFLEQCGVKAAFGVISIHNMPILDAFGERGKIRFIPARGEAGGANMADAYA 74 ++T A +++ G+ AFGV P A ++G I+ I AR G +MA+ Y Sbjct: 3 KMTAAQAAVWVMQKEGIDQAFGVPGAAINPFYSAMQKQGTIKHILARHVEGATHMAEGYT 62 Query: 75 R-TTGGLGVCLTSTGTAAGNAAGAMVEALTAGTPLLHLTGQIETPYLDQSLAYIHEAPDQ 133 R +G +GV L ++G + + A+ P+L +TGQ L + +A D Sbjct: 63 RAKSGNIGVALATSGPGGTDMVTGLYSAIADSIPILCVTGQAPRARLHKE---DFQAVDI 119 Query: 134 LSMLKAISKAAFRIRSVETAISTIKLAVQTALTPPMGPVSVEIPIDIQAAMISMPTNL-Q 192 S+ K ++K + +R + A + GPV +++P D+Q A I +L + Sbjct: 120 ESISKPVTKWSVMVREPALVPQVFQQAFHIMRSGRPGPVLIDLPFDVQVAEIEFDPDLYE 179 Query: 193 PLAIPPSLPSARALDELAERLLKARRPLLWLGGGARHAG--PQVQRLLAL-GFGVVTSTQ 249 PL + + + ++ L A RPLL GGG +A P + L VV + Sbjct: 180 PLPVYKPQATRKQIEAAIAMLNAAERPLLISGGGVINANATPLMLEFAELVNVPVVPTLM 239 Query: 250 GRGIVPEDDARSLGAFNL---HKPVENFYQSCDAMLVVGSRLRGNETLKYEL-KLPRPLY 305 G G VP+D +G L H+ + D +G+R T ++ R Sbjct: 240 GWGTVPDDHPLMVGMVGLQTSHRYGNATMLASDFAFGIGNRWANRFTGSIDVFTKDRKFV 299 Query: 306 RVDADPAAEGRCYTSDYFVCGDSALVLG---GLADRLAA---LQVDPAFMADLKQARESA 359 +D +P GR + D + D+ L +A L A L+ A++A+ ++ + + Sbjct: 300 HIDIEPTQIGRVFGPDLGITSDAGAALKLMIEVAKELKAAGKLKNRDAWLAECQERKRTM 359 Query: 360 VHGLLDGLGPYG--TLVEQLQQAAGRQFNWVRDVTVSNSTWGNRYLRIFDPRAGVHALGG 417 + + P + +++ G+ ++ ++ +S G ++L ++ R ++ Sbjct: 360 LRKTDFDVTPIKPQRVYQEMNAVFGKTARYISNIGLSQIAAG-QFLHVYKERNWINC--- 415 Query: 418 GIGQGLAMGIGAAIGAAVTQSGKKTFTLAGDGGFILNLGELATAVQEQADMVIVLMNDQG 477 G L I AA+G + + GD F + ELA Q + VL+N+ Sbjct: 416 GQAGPLGWTIPAALGVRAADPTSEIVAITGDYDFQFLIEELAAGAQFNLPYIHVLVNNSY 475 Query: 478 YGVIKNIQ 485 G+I+ Q Sbjct: 476 LGLIRQAQ 483 >gi|152980239|ref|YP_001352089.1| putative oxalyl-CoA decarboxylase [Janthinobacterium sp. Marseille] Length = 570 Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 68/272 (25%), Positives = 118/272 (43%), Gaps = 15/272 (5%) Query: 26 LEQCGVKAAFGVISIHNMPILDAFGERGKIRFIPARGEAGGANMADAYARTTGGLGVCLT 85 LE G+ +G++ I I + RG +F R E A T GVC+T Sbjct: 25 LEMNGITNIYGLLGIPVTEIGRMWQARGN-KFFSFRNEQNAGYAASVAGYLTKKPGVCVT 83 Query: 86 STGTAAGNAAGAMVEALTAGTPLLHLTGQIETPYLDQSLAYIHEAPDQLSMLKAISKAAF 145 + N A+ A T P++ ++G E +D +E DQL++ + KA+F Sbjct: 84 VSAPGFLNGLTALANATTNCFPMILISGSSEREIVDLQQGD-YEEMDQLNIARPHCKASF 142 Query: 146 RIRSVETAISTIKLAVQTALTPPMGPVSVEIPIDIQAAMISMPTNLQPLAI-----PPSL 200 RI E + A++TAL+ G V ++IP + + +S + L + P L Sbjct: 143 RINRTEDIGVAVVRAIRTALSGRPGGVYLDIPARLFSTTMSAEEGQKSLFVPVDPAPAQL 202 Query: 201 PSARALDELAERLLKARRPLLWLGGGARHA--GPQVQRLL-ALGFGVVTSTQGRGIVPED 257 P+ A+ E + A++PL+ LG GA +A ++ L+ G + +G+V + Sbjct: 203 PAPSAVSRAVELIKGAKKPLILLGKGAAYAQCDADIKALIEETGIPFTPMSMAKGLVSDT 262 Query: 258 DARSLGAFNLHKPVENFYQSCDAMLVVGSRLR 289 + A Q D ++++G+RL Sbjct: 263 HPQCAAAAR-----SMVLQESDVVILIGARLN 289 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,226,404 Number of extensions: 48033 Number of successful extensions: 162 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 3 Length of query: 571 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 483 Effective length of database: 895,685 Effective search space: 432615855 Effective search space used: 432615855 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)