BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1294.p (274 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981549|ref|YP_001352605.1| glucose-1-dehydrogenase, (3-oxo... 100 7e-23 gi|152982667|ref|YP_001354167.1| glucose-1-dehydrogenase, (3-oxo... 99 2e-22 gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 93 2e-20 gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Jant... 87 2e-18 gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase... 77 8e-16 >gi|152981549|ref|YP_001352605.1| glucose-1-dehydrogenase, (3-oxoacyl-(acyl carrier protein) reductase) [Janthinobacterium sp. Marseille] Length = 254 Score = 100 bits (250), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 90/271 (33%), Positives = 130/271 (47%), Gaps = 23/271 (8%) Query: 3 MTSLQGKVAVVTGGSSGIGLASVELLLEAGAAVAFCGRDSARLKEAEAALRQRYPRASLY 62 M S KVA+VTGGSSGIG + L+ AGA+V GRD A+L A + + LY Sbjct: 1 MNSFSSKVAIVTGGSSGIGKEVAKRLVAAGASVVIGGRDEAKLANAAREIGGKV----LY 56 Query: 63 SAPCDVLAQQQVQAFANAVENTLGPVSILVNNAGQGRVSTFADTSDDAWSEELHLKFFSV 122 A D+ +A A + G V IL+NNAG + F + + +S L ++ Sbjct: 57 VA-GDIALPSTAKALVAAATDAFGGVDILINNAGVFKPKAFLEVDEQEYSWFLD----TI 111 Query: 123 IYPTRAFLPQLQAMSARHGDAAIVCVNSLLATQP--EPHMVATSAARAGVHNLVRSLATE 180 + G AIV SL A Q A SAA AGVH L R+LA E Sbjct: 112 LKGKFFMAQAAAKAMQLRGGGAIVQTGSLWAIQAIGATPSAAYSAANAGVHALTRNLAIE 171 Query: 181 LATGPRACVRVNGILIGLVESGQWRRRYAARDEALQDQTWAQWSAALAEKKHIQLGRLGL 240 LA +R+N + +VE+ + D+ ++D T ++A LGR G Sbjct: 172 LAP---FNIRINTVAPAVVETPVYNTFM--TDDQVKD-TLPSFNA------FHPLGRNGQ 219 Query: 241 PREAAQAIVFLASPLSSYTTGSHIDVSGGLS 271 P + A+A++FLAS +S+ TG+ + V GG++ Sbjct: 220 PADVAEAMLFLASSSASWITGTVLPVDGGVT 250 >gi|152982667|ref|YP_001354167.1| glucose-1-dehydrogenase, (3-oxoacyl-(acyl carrier protein) reductase) [Janthinobacterium sp. Marseille] Length = 258 Score = 99.4 bits (246), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 89/272 (32%), Positives = 123/272 (45%), Gaps = 24/272 (8%) Query: 3 MTSLQGKVAVVTGGSSGIGLASVELLLEAGAAVAFCGRDSARLKEAEAALRQRYPRASLY 62 M S KVA+VTGG SGIG L++AGA V GRD+A+L+ + + Sbjct: 1 MNSFSSKVAIVTGGGSGIGKEVAARLVKAGANVVIGGRDAAKLQRVATEIDPSGDHVRFH 60 Query: 63 SAPCDVLAQQQVQAFANAVENTLGPVSILVNNAGQGRVSTFADTSDDAWSEELHLKFF-- 120 + D+ A + + G V IL+NNAG R F + EE +F Sbjct: 61 AG--DIAQPATATALVDLAKQAFGGVDILINNAGVFRPKAFLEV------EEAEYDWFLD 112 Query: 121 SVIYPTRAFLPQLQAMSARHGDAAIVCVNSLLATQP--EPHMVATSAARAGVHNLVRSLA 178 +++ G AIV SL A Q A SAA AGVH L R+LA Sbjct: 113 TILKGKFFMAQAAAKAMKLRGGGAIVQTGSLWALQAIGATPSAAYSAANAGVHALTRNLA 172 Query: 179 TELATGPRACVRVNGILIGLVESGQWRRRYAARDEALQDQTWAQWSAALAEKKHIQLGRL 238 ELA + +R+N + G+VE+ + DQ A A A LGR Sbjct: 173 IELAA---SNIRINTVAPGVVETPVYNTFMT------DDQVKATLPAFNAFHP---LGRN 220 Query: 239 GLPREAAQAIVFLASPLSSYTTGSHIDVSGGL 270 G P + A+AI+FLAS +S+ TG+ + V GG+ Sbjct: 221 GQPADVAEAILFLASANASWITGTVLSVDGGV 252 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 92.8 bits (229), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 85/270 (31%), Positives = 129/270 (47%), Gaps = 26/270 (9%) Query: 1 MAMTSLQGKVAVVTGGSSGIGLASVELLLEAGAAVAFCGRDSARLKEAEAALRQRYPRAS 60 M L G+VA+VTG S GIG A + L + GA V E+ AA Y Sbjct: 1 MTTVDLSGQVALVTGASRGIGRAIAQELAKLGAKVI-----GTATSESGAAAISEYLGNG 55 Query: 61 LYSAPCDVLAQQQVQAFANAVENTLGPVSILVNNAGQGRVSTFADTSDDAWSEELHLKFF 120 DV + A + ++ G VSILVNNAG + D+ W + Sbjct: 56 GKGVVLDVNDAARSVALIDEIQKEFGAVSILVNNAGITQDQLAMRMKDEEWDSVIATNLT 115 Query: 121 SVIYPTRAFLPQLQAMSARHGDAAIVCVNSLLATQPEPHMVATSAARAGVHNLVRSLATE 180 +V +RA L + M A+ G I+ + S++ + + +AA+AGV + R+LA E Sbjct: 116 AVGRLSRAVLRGM--MKAKTGR--IINITSVVGSSGNAGQMNYAAAKAGVAGMSRALARE 171 Query: 181 LATGPRACVRVNGILIGLVESGQWRRRYAARDEALQDQTWAQWSAALAEKKHIQLGRLGL 240 + G R + VN I G +++ + L +Q Q +A L + + LGRLG+ Sbjct: 172 I--GSR-NITVNCIAPGFIDTDMTK--------TLSEQ---QIAALL---QQVPLGRLGV 214 Query: 241 PREAAQAIVFLASPLSSYTTGSHIDVSGGL 270 P + A A+ FLASP +SY TG+ + V+GG+ Sbjct: 215 PEDIAAAVSFLASPQASYITGTTLHVNGGM 244 >gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Janthinobacterium sp. Marseille] Length = 246 Score = 86.7 bits (213), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/262 (29%), Positives = 118/262 (45%), Gaps = 23/262 (8%) Query: 9 KVAVVTGGSSGIGLASVELLLEAGAAVAFCGRDSARLKEAEAALR-QRYPRASLYSAPCD 67 ++A+VTGG G+G A L G V S K+A+ L+ + ++ PCD Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTT--YSPGNKKADEWLKLMKESGYDFHAYPCD 60 Query: 68 VLAQQQVQAFANAVENTLGPVSILVNNAGQGRVSTFADTSDDAWSEELHLKFFSVIYPTR 127 V Q +E +GPV +LVNNAG R TF W + SV T+ Sbjct: 61 VSDYDSAQQCVAQIEKEMGPVDVLVNNAGITRDITFKKMGKPDWDAVMATNLDSVFNMTK 120 Query: 128 AFLPQLQAMSARHGDAAIVCVNSLLATQPEPHMVATSAARAGVHNLVRSLATELATGPRA 187 P M R G I+ ++S+ + SAA+AG+H ++LA E+A R Sbjct: 121 ---PVCDGMVER-GWGRIINISSVNGQKGAFGQTNYSAAKAGMHGFTKALALEVA---RK 173 Query: 188 CVRVNGILIGLVESGQWRRRYAARDEALQDQTWAQWSAALAEKKHIQLGRLGLPREAAQA 247 V VN I G + + + A + L + Q I +GRLG P E A Sbjct: 174 AVTVNTISPGYIGT---KMVMAIPQDVLDTKIVPQ----------IPMGRLGKPEEIAGL 220 Query: 248 IVFLASPLSSYTTGSHIDVSGG 269 + +LAS +++ TG++I ++GG Sbjct: 221 VAYLASDEAAFLTGANIAINGG 242 >gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase [Janthinobacterium sp. Marseille] Length = 264 Score = 77.4 bits (189), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 77/272 (28%), Positives = 119/272 (43%), Gaps = 15/272 (5%) Query: 1 MAMTSLQGKVAVVTGGSSGIGLASVELLLEAGAAVAFCG-RDSARLKEAEAALRQRYPRA 59 M L GK A+VTG +SGIGL + L + GA + G D+ +K +AAL + Y Sbjct: 1 MQKAPLHGKTALVTGSTSGIGLGIAQALAQQGADIVLNGFGDANEIKTLQAALMRNYGVK 60 Query: 60 SLYSAPCDVLAQQQVQAFANAVENTLGPVSILVNNAGQGRVSTFADTSDDAWSEELHLKF 119 ++ P D+ +++A G V ILVNNAG T D + W + + Sbjct: 61 CVHH-PADMSKPAEIEAMMAFAAQQFGRVDILVNNAGIQHTETIEDFPVEKWDAIIAINL 119 Query: 120 FSVIYPTRAFLPQLQAMSARHGDAAIVCVNSLLATQPEPHMVATSAARAGVHNLVRSLAT 179 S + TR LP +QA + I+ + S+ A AA+ G+ L + A Sbjct: 120 SSAFHTTRLALPMMQAKNW----GRIINIASVHGLVGSVQKSAYVAAKHGIVGLTKVTAL 175 Query: 180 ELATGPRACVRVNGILIGLVESGQWRRRYAAR--DEALQDQTWAQWSAALAEKKHIQLGR 237 E+A C N I G V + +++ AR E L D+ A ++EK+ G Sbjct: 176 EMAHTGITC---NAICPGWVLTPLVQKQVDARAAREGLSDE--AAKKDLVSEKQ--PSGE 228 Query: 238 LGLPREAAQAIVFLASPLSSYTTGSHIDVSGG 269 P++ VFL S + G+ ++ GG Sbjct: 229 FVTPQQLGALAVFLCSEAAVQVRGAAWNMDGG 260 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.129 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 563,043 Number of extensions: 19735 Number of successful extensions: 124 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 105 Number of HSP's successfully gapped: 16 Length of query: 274 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 192 Effective length of database: 917,867 Effective search space: 176230464 Effective search space used: 176230464 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)