BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1293.p (272 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981351|ref|YP_001352423.1| IclR family transcriptional reg... 70 2e-13 gi|152981479|ref|YP_001355355.1| IclR family transcriptional reg... 67 1e-12 gi|152980799|ref|YP_001354172.1| IclR family transcriptional reg... 57 2e-09 >gi|152981351|ref|YP_001352423.1| IclR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 258 Score = 69.7 bits (169), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/260 (25%), Positives = 117/260 (45%), Gaps = 6/260 (2%) Query: 1 MPEEESQDKYSVPGLERGLRLLCEFSRQDKTLSAPELARRLDIPRSTVFRLLATLERMGF 60 M DK S+ +ER + LL + +S EL+ + ST R+L L F Sbjct: 1 MKTAADTDKTSIQVIERMVALLDALALYPDPVSLKELSSVTGLHPSTAHRILNDLVIKRF 60 Query: 61 VERADGGRDYRLGMSVLRLGFEYLASLELTEIGRPLLDRLRDEIGYSCNLVVRDGRSIVY 120 V+R++ G YRLGM +L LG + L++ E L+ L + + NL VR I+Y Sbjct: 61 VDRSEPG-TYRLGMRLLELGNIVKSRLDVREAALDLMRHLHRKTNQTVNLSVRQNDEIIY 119 Query: 121 VAKSVTQTAFTSHVN-VGTRLPAHATVLGRVLLEDLSLPQLRALYPEQHLEVFSSNTPKT 179 + ++ ++ + V VG R P H T G++ L ++A L + N+ Sbjct: 120 IDRAFSERSGMQVVRAVGGRAPLHLTSTGKLFLSIDEPRMVQAYATRTGLAGHNKNSITD 179 Query: 180 VVELFDMVQADKERGFVLQEGFFETSISTVAAPVRDHSGLVVAALGATIPSPHIDASQLD 239 + +L + + G+ E + +AA + D +G ++A L + P+ + L Sbjct: 180 LKKLEGELNQVRLHGYARDNEELELGVRCMAAGIHDDTGRLIAGLSISAPADRLQEEWL- 238 Query: 240 VIVARVRETAAELSRLLDHA 259 A + +TA ++S L ++ Sbjct: 239 ---ADLMDTAKQISAALGYS 255 >gi|152981479|ref|YP_001355355.1| IclR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 257 Score = 67.0 bits (162), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 102/226 (45%), Gaps = 10/226 (4%) Query: 36 ELARRLDIPRSTVFRLLATLERMGFVERADGGRDYRLGMSVLRLGFEYLASLELTEIGRP 95 +LAR +++ T R+L L G + + G + Y LG + LG L +I P Sbjct: 35 DLAREMELEHPTAHRMLKALVAEGMLVQLSGSKRYTLGPVMFELGLAATHQFNLRDICAP 94 Query: 96 LLDRLRDEIGYSCNLVVRDGRSIVYVAKSVTQTAF-TSHVNVGTRLPAHATVLGRVLLED 154 +L+RL G + L VR G + +++ T V VG+R P + G LL Sbjct: 95 VLERLAQSTGDTSFLFVRSGNDAICLSRIQGNYPIQTPVVPVGSRQPLGVSAGGLALLSC 154 Query: 155 LSLPQ----LRALYPEQHLEVFSSNTPKTVVELFDMVQADKERGFVLQEGFFETSISTVA 210 L + LR + P L V+ + V++ ++ E G+ +S + Sbjct: 155 LPKAEAEQILREVEPR--LSVYENLDINDVIDHYNRTH---ELGYAWISNHAVPGVSALG 209 Query: 211 APVRDHSGLVVAALGATIPSPHIDASQLDVIVARVRETAAELSRLL 256 P+R+ +G VAA+ + A++++ I+ +RE A +++RLL Sbjct: 210 LPIRNAAGTAVAAITVATTLARMTATRVNEILPILREAAQDVARLL 255 >gi|152980799|ref|YP_001354172.1| IclR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 352 Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/261 (23%), Positives = 113/261 (43%), Gaps = 14/261 (5%) Query: 5 ESQDKYSVPGLERGLRLLCEFSRQDKTLSAPELARRLDIPRSTVFRLLATLERMGFV-ER 63 E + + +E G R+L + L ++A + + V L + + +G + + Sbjct: 84 EQSKRRGIQSIEIGFRILDVLRTAGRPLPLRQIAESAGMAVANVHYYLVSFQAVGVIRQE 143 Query: 64 ADGGRDYRLGMSVLRLGFEYLASLELTEIGRPLLDRLRDEIGYSCNLVVRDGR--SIVYV 121 AD G Y LG L+LG L ++ RP++ L +G++ L V R +IVY Sbjct: 144 ADSGH-YGLGPYALKLGMAALEQFDVFTAARPVMAELAATVGHTVFLGVWGNRGPTIVYR 202 Query: 122 AKSVTQTAFTSHVNVGTRLPAHATVLGRVLLE--------DLSLPQLRALYPEQHLEVFS 173 + T + VG+ LP + LGR L +L +L+ ++H Sbjct: 203 IEGGTSRPIL-ELRVGSVLPLLNSALGRNFLAHLPRTITGELLKQELKINLDDKHAPSH- 260 Query: 174 SNTPKTVVELFDMVQADKERGFVLQEGFFETSISTVAAPVRDHSGLVVAALGATIPSPHI 233 S+ P++ ++ M+ + KE G ++++APV DH G ++AA+ P + Sbjct: 261 SDLPQSAADIEKMLASVKENGLSRCRDALLPHFTSLSAPVFDHLGEMIAAITLMGPMGVL 320 Query: 234 DASQLDVIVARVRETAAELSR 254 D V ++ A ++S+ Sbjct: 321 DDDLQGVTAKTLKARALQISQ 341 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.137 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 603,477 Number of extensions: 24187 Number of successful extensions: 92 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 89 Number of HSP's successfully gapped: 3 Length of query: 272 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 190 Effective length of database: 917,867 Effective search space: 174394730 Effective search space used: 174394730 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)