BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1290.p (256 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981525|ref|YP_001354195.1| dehydrogenase/reductase family ... 179 1e-46 gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 119 1e-28 gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase... 103 9e-24 gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Jant... 102 3e-23 gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Jant... 98 5e-22 >gi|152981525|ref|YP_001354195.1| dehydrogenase/reductase family protein [Janthinobacterium sp. Marseille] Length = 248 Score = 179 bits (454), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 96/246 (39%), Positives = 140/246 (56%), Gaps = 9/246 (3%) Query: 10 LAGRRILVTGAARGLGLAFVQAIAAAGASVAMADILQEELASAVARLQQAGMKVQGFALD 69 L + I++TGA +G A+ + AAGA++ MAD+ + Q MK+ D Sbjct: 5 LRNKTIIITGAGGNIGHAYCDGLVAAGANIVMADLQDLSAQAQAYGQQAIAMKI-----D 59 Query: 70 LADPASVRIAAAAATQWLGGLDGLVNNAAITNSGGKSS-EQLELEMWDRVMDVNVRGTWL 128 ++DPAS+ + A G +DG++NNA S + ++ WDR ++NVRG WL Sbjct: 60 VSDPASIEMMAKQTHAHFGRIDGIINNAGFFKGCSFGSFMDIPIDEWDRCYEINVRGVWL 119 Query: 129 MTNACLPALRASGRGAVVNLSSDTPLWGAPNLLAYVASKSAVIGMTRSLARELGADNITV 188 A P +R G G ++N+SS+TP G PN L YV+SK+A+IG+TRSLARE+GA NI Sbjct: 120 CCRAVFPYMREQGSGKIINVSSNTPYKGVPNFLHYVSSKAAIIGLTRSLAREVGAHNIQA 179 Query: 189 NAVAPGLTLVEATQYVPQAR--HQHYLDGRAIRRDQLPEDVCGAVVFALSDLARFFTGQV 246 N + P L + +A Q + + GR ++R Q P D+ GA +F LSD + F TGQ Sbjct: 180 NTLCPDL-IPDADILAKQGSVADERTIAGRCLQRSQTPHDMVGAALFLLSDGSDFITGQS 238 Query: 247 MAVNGG 252 + VNGG Sbjct: 239 LLVNGG 244 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 119 bits (299), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 130/251 (51%), Gaps = 5/251 (1%) Query: 6 TATLLAGRRILVTGAARGLGLAFVQAIAAAGASVAMADILQEELASAVARLQQAGMKVQG 65 T L+G+ LVTGA+RG+G A Q +A GA V + E A+A++ G K G Sbjct: 2 TTVDLSGQVALVTGASRGIGRAIAQELAKLGAKV-IGTATSESGAAAISEYLGNGGK--G 58 Query: 66 FALDLADPASVRIAAAAATQWLGGLDGLVNNAAITNSGGKSSEQLELEMWDRVMDVNVRG 125 LD+ D A + G + LVNNA IT + + +++ E WD V+ N+ Sbjct: 59 VVLDVNDAARSVALIDEIQKEFGAVSILVNNAGITQD--QLAMRMKDEEWDSVIATNLTA 116 Query: 126 TWLMTNACLPALRASGRGAVVNLSSDTPLWGAPNLLAYVASKSAVIGMTRSLARELGADN 185 ++ A L + + G ++N++S G + Y A+K+ V GM+R+LARE+G+ N Sbjct: 117 VGRLSRAVLRGMMKAKTGRIINITSVVGSSGNAGQMNYAAAKAGVAGMSRALAREIGSRN 176 Query: 186 ITVNAVAPGLTLVEATQYVPQARHQHYLDGRAIRRDQLPEDVCGAVVFALSDLARFFTGQ 245 ITVN +APG + T+ + + + L + R +PED+ AV F S A + TG Sbjct: 177 ITVNCIAPGFIDTDMTKTLSEQQIAALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGT 236 Query: 246 VMAVNGGFVMH 256 + VNGG M+ Sbjct: 237 TLHVNGGMYMN 247 >gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase [Janthinobacterium sp. Marseille] Length = 264 Score = 103 bits (258), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 123/258 (47%), Gaps = 16/258 (6%) Query: 10 LAGRRILVTGAARGLGLAFVQAIAAAGASVAMADI--LQEELASAVARLQQAGMKVQGFA 67 L G+ LVTG+ G+GL QA+A GA + + E A ++ G+K Sbjct: 6 LHGKTALVTGSTSGIGLGIAQALAQQGADIVLNGFGDANEIKTLQAALMRNYGVKCVHHP 65 Query: 68 LDLADPASVRIAAAAATQWLGGLDGLVNNAAITNSGGKSSEQLELEMWDRVMDVNVRGTW 127 D++ PA + A A Q G +D LVNNA I ++ ++ E +E WD ++ +N+ + Sbjct: 66 ADMSKPAEIEAMMAFAAQQFGRVDILVNNAGIQHT--ETIEDFPVEKWDAIIAINLSSAF 123 Query: 128 LMTNACLPALRASGRGAVVNLSSDTPLWGAPNLLAYVASKSAVIGMTRSLARELGADNIT 187 T LP ++A G ++N++S L G+ AYVA+K ++G+T+ A E+ IT Sbjct: 124 HTTRLALPMMQAKNWGRIINIASVHGLVGSVQKSAYVAAKHGIVGLTKVTALEMAHTGIT 183 Query: 188 VNAVAPGLTLVEATQYVPQAR-HQHYLDGRAIRRDQL-----------PEDVCGAVVFAL 235 NA+ PG L Q AR + L A ++D + P+ + VF Sbjct: 184 CNAICPGWVLTPLVQKQVDARAAREGLSDEAAKKDLVSEKQPSGEFVTPQQLGALAVFLC 243 Query: 236 SDLARFFTGQVMAVNGGF 253 S+ A G ++GG+ Sbjct: 244 SEAAVQVRGAAWNMDGGW 261 >gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 246 Score = 102 bits (253), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 117/240 (48%), Gaps = 6/240 (2%) Query: 16 LVTGAARGLGLAFVQAIAAAGASVAMADILQEELASA-VARLQQAGMKVQGFALDLADPA 74 ++TGA+RG+G A + +A G +V + A A VA+LQ A + D+A+ A Sbjct: 10 IITGASRGIGAAIAERLAQDGFAVVINYASSATEADALVAKLQAAQHEAIAVKADVANSA 69 Query: 75 SVRIAAAAATQWLGGLDGLVNNAAITNSGGKSSEQLELEMWDRVMDVNVRGTWLMTNACL 134 VR Q LG +D L+NNA I S + E+++R +NVRGT+ Sbjct: 70 DVRRLFDETEQKLGKVDVLINNAGILQMA--SLAETSDELFERTFSINVRGTFNTLREAA 127 Query: 135 PALRASGRGAVVNLSSDTPLWGAPNLLAYVASKSAVIGMTRSLARELGADNITVNAVAPG 194 L GR VVN SS T PN Y SK+AV +T A+E+ NITVNAVAPG Sbjct: 128 TRLNDGGR--VVNFSSTTVAMSLPNYSVYTGSKAAVEVLTPIFAKEMRGRNITVNAVAPG 185 Query: 195 LTLVE-ATQYVPQARHQHYLDGRAIRRDQLPEDVCGAVVFALSDLARFFTGQVMAVNGGF 253 + +A+ Q + ++R P+D+ AV F + + GQV+ NGG Sbjct: 186 PVATDLFFNGKTEAQIQQLANMPPLQRLGQPDDIAAAVSFLVGRDGGWINGQVLRANGGL 245 >gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Janthinobacterium sp. Marseille] Length = 246 Score = 98.2 bits (243), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 119/250 (47%), Gaps = 12/250 (4%) Query: 13 RRILVTGAARGLGLAFVQAIAAAGASVAMADILQEELASAVARL-QQAGMKVQGFALDLA 71 R LVTG GLG A +AA G V + A +L +++G + D++ Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPGNKKADEWLKLMKESGYDFHAYPCDVS 62 Query: 72 DPASVRIAAAAATQWLGGLDGLVNNAAITNSGGKSSEQLELEMWDRVMDVNVRGTWLMTN 131 D S + A + +G +D LVNNA IT + +++ WD VM N+ + MT Sbjct: 63 DYDSAQQCVAQIEKEMGPVDVLVNNAGITRD--ITFKKMGKPDWDAVMATNLDSVFNMTK 120 Query: 132 ACLPALRASGRGAVVNLSSDTPLWGAPNLLAYVASKSAVIGMTRSLARELGADNITVNAV 191 + G G ++N+SS GA Y A+K+ + G T++LA E+ +TVN + Sbjct: 121 PVCDGMVERGWGRIINISSVNGQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTI 180 Query: 192 APGLTLVEATQYVPQARHQHYLDGRAIRRDQL-----PEDVCGAVVFALSDLARFFTGQV 246 +PG + +P Q LD + + + + PE++ G V + SD A F TG Sbjct: 181 SPGYIGTKMVMAIP----QDVLDTKIVPQIPMGRLGKPEEIAGLVAYLASDEAAFLTGAN 236 Query: 247 MAVNGGFVMH 256 +A+NGG M+ Sbjct: 237 IAINGGQHMY 246 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.131 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 552,301 Number of extensions: 21120 Number of successful extensions: 164 Number of sequences better than 1.0e-08: 23 Number of HSP's gapped: 123 Number of HSP's successfully gapped: 23 Length of query: 256 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 175 Effective length of database: 921,564 Effective search space: 161273700 Effective search space used: 161273700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)