BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1289.p (287 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bica... 114 6e-27 gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bica... 75 4e-15 gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport sys... 75 5e-15 gi|152981719|ref|YP_001355226.1| ABC-type nitrate/sulfonate/bica... 57 1e-09 gi|152981495|ref|YP_001352171.1| ABC-type nitrate transport syst... 55 5e-09 >gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 296 Score = 114 bits (286), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 114/231 (49%), Gaps = 8/231 (3%) Query: 57 LLGLPEYILPNFMQVLREGVVMWNNAQLLQHFGITAMEVVLGFFFGALLGLAVGVALGLS 116 LL P I+ +L +G LL H + V G+ GA+L + G+ +GLS Sbjct: 74 LLPPPSEIVQTLSALLEQG--------LLVHISASVARVFSGYAIGAVLAILFGLFVGLS 125 Query: 117 PRAEAMLSPYILALQIAPKVAFAPLFVMWLGYTIYPKIIVAVLIVFFPIMINVLSAIRTV 176 AEA P AL+ P +A+ PL ++W G PKI + + FFPI + ++S IR V Sbjct: 126 KHAEAFFEPTFQALRAIPSLAWVPLLLLWFGIDETPKITLIAIGAFFPIYLGLVSGIRNV 185 Query: 177 DPDMVNLVRTLNAGRWQIFHLVEFRSALPALFSGLRIASTLSVIGVTVGELVGGNQGLGY 236 D ++ L + + +ALP+LF+GLR +L+ + + EL+ +G+GY Sbjct: 186 DRKLIELGEIYGLSAPALARRIVLPAALPSLFTGLRNGLSLAWMFLVAAELIAATKGIGY 245 Query: 237 LLVDGEGQGNTAAVFVSIVALTLIGVVTYGMVVWAERKVLHYLPRAVTSTV 287 LL DG V +I L ++G +T G++ W E + L + T TV Sbjct: 246 LLTDGRETSRPDVVLAAIFLLAILGKLTDGLLKWLETRKLAWSDSLATRTV 296 >gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 276 Score = 75.5 bits (184), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 94/195 (48%) Query: 87 HFGITAMEVVLGFFFGALLGLAVGVALGLSPRAEAMLSPYILALQIAPKVAFAPLFVMWL 146 H + V GFF AL+G+ +G+ +G +L P + L+ P A+ PL +++ Sbjct: 79 HLWKSVTRVYGGFFAAALVGIPLGLLIGRIKVIRDLLDPTLQLLRPVPVTAWLPLSMIFF 138 Query: 147 GYTIYPKIIVAVLIVFFPIMINVLSAIRTVDPDMVNLVRTLNAGRWQIFHLVEFRSALPA 206 G I + L F+PI+ N ++ VD + L +F V +A+P+ Sbjct: 139 GIGPNAAIFLVFLGAFYPIVFNTTFGVKAVDNRLFEAALMLGCNGSSLFRQVVLPAAMPS 198 Query: 207 LFSGLRIASTLSVIGVTVGELVGGNQGLGYLLVDGEGQGNTAAVFVSIVALTLIGVVTYG 266 + +GLR+ + I + VGE+ G +GLG +++DG T V +V + ++G T Sbjct: 199 ILNGLRLGHGFAWILIVVGEMTGVPEGLGAVIMDGRMLSRTDLVIAGMVVIGIVGYSTDR 258 Query: 267 MVVWAERKVLHYLPR 281 ++V +L + P+ Sbjct: 259 ILVAINNYLLKWSPQ 273 >gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport system permease protein [Janthinobacterium sp. Marseille] Length = 276 Score = 74.7 bits (182), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 100/217 (46%) Query: 45 LLFLAAWQWGPGLLGLPEYILPNFMQVLREGVVMWNNAQLLQHFGITAMEVVLGFFFGAL 104 +L ++ WQ L L ILP V + + + +L H ++ F G Sbjct: 37 VLLISVWQIASQLGWLSSRILPEPFAVAKAAWELALSGELWTHVKVSLWRATTSFAVGGG 96 Query: 105 LGLAVGVALGLSPRAEAMLSPYILALQIAPKVAFAPLFVMWLGYTIYPKIIVAVLIVFFP 164 LGL +G+ G AE +L + ++ P +A PL ++W G KI + + VFFP Sbjct: 97 LGLLLGLLTGTFKTAETLLDTTLQMIRNIPALALIPLVILWFGIEETSKIFLVAVGVFFP 156 Query: 165 IMINVLSAIRTVDPDMVNLVRTLNAGRWQIFHLVEFRSALPALFSGLRIASTLSVIGVTV 224 + +N IR+VD ++ + ++ W ++ V ALP++ G+R + L + + V Sbjct: 157 VYLNTFHGIRSVDKGLIEMAKSYGLSGWSLYRDVILPGALPSILVGVRFSLGLVWVLLIV 216 Query: 225 GELVGGNQGLGYLLVDGEGQGNTAAVFVSIVALTLIG 261 E + G+GY+ ++ T V V I+ L+G Sbjct: 217 AETISAQSGIGYMTMNAREFLQTDVVLVGILLYALLG 253 >gi|152981719|ref|YP_001355226.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 255 Score = 57.4 bits (137), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/258 (25%), Positives = 110/258 (42%), Gaps = 14/258 (5%) Query: 28 PALSEKARTVCGSLLLLLLFLA----AWQWGPGLLGLPEYILPNFMQVLREGVVMWNNAQ 83 P + A V G +L +LL+ A AW PG L P + FMQ W + Sbjct: 7 PWFTRVAYGVTGVVLFVLLWKASGFFAWV-NPGTLPDPFKLPHAFMQ-------EWTAGR 58 Query: 84 LLQHFGITAMEVVLGFFFGALLGLAVGVALGLSPRAEAMLSPYILALQIAPKVAFAPLFV 143 LL G + + G G L G+A G+A E + + I L+ P +A+ + Sbjct: 59 LLPAIGSSLVHYFWGLGLGTLFGIAFGLAAATIRPFELLQAYLIRILRPIPPLAWVVFAI 118 Query: 144 MWLGYTIYPKIIVAVLIVFFPIMINVLSAIRTVDPDMVNLVRTLNAGR-WQIFHLVEFRS 202 W + V + VF+ SA+R +DP L R+ G W+ + + Sbjct: 119 AWFKVSHAGAAFVISIGVFWINYYATASAVRNIDPRFYELARSFGQGSYWRRAVSITLPA 178 Query: 203 ALPALFSGLRIASTLSVIGVTVGELVGGNQGLGYLLVDGEGQGNTAAVFVSIVALTLIGV 262 P +G+R + + + EL+ G G+G + G G AV + ++A++L+ Sbjct: 179 IAPGTLAGIRTGIGQAWMTLIAAELL-GVPGMGQEMNAAAGVGAYEAVVIYMLAISLVYA 237 Query: 263 VTYGMVVWAERKVLHYLP 280 ++ + V E++VL + P Sbjct: 238 ISDLIYVLIEKRVLSWRP 255 >gi|152981495|ref|YP_001352171.1| ABC-type nitrate transport system, permease component [Janthinobacterium sp. Marseille] Length = 309 Score = 55.1 bits (131), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 79/163 (48%), Gaps = 9/163 (5%) Query: 79 WNNAQLLQHFGITAMEVVLGFFFGALLGLAVGVALGLSPRAEAMLSPYILALQIAPKVAF 138 WN L+ G +GF AL+G+ +G +G M +P I L+ +A+ Sbjct: 113 WNILASLKRVG-------MGFGMAALVGIPLGFMIGRFKFLSGMFNPIISLLKPVSPLAW 165 Query: 139 APLFVMWLGYTIYPKIIVAVLIV-FFPIMINVLSAIRTVDPDMVNLVRTLNAGRWQIFHL 197 P+ ++ + P I ++ I +P++IN ++ V D +N+ + L W+I Sbjct: 166 LPIGLL-VFKAADPAAIWSIFICSIWPMIINTAVGVQRVPQDYMNVAKVLKLSEWKIVTK 224 Query: 198 VEFRSALPALFSGLRIASTLSVIGVTVGELVGGNQGLGYLLVD 240 + F S LP + +G+R+A + + + E++ G G+G+ + D Sbjct: 225 ILFPSVLPYMLTGVRLAIGTAWLVIVAAEMLTGGVGIGFWVWD 267 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.326 0.141 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 604,538 Number of extensions: 23029 Number of successful extensions: 123 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 120 Number of HSP's successfully gapped: 6 Length of query: 287 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 205 Effective length of database: 917,867 Effective search space: 188162735 Effective search space used: 188162735 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)