BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1288.p
         (331 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981578|ref|YP_001354306.1| ABC-type nitrate/sulfonate/bica...    74   1e-14

>gi|152981578|ref|YP_001354306.1| ABC-type
           nitrate/sulfonate/bicarbonate transport systems,
           periplasmic component [Janthinobacterium sp. Marseille]
          Length = 332

 Score = 73.9 bits (180), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 153/335 (45%), Gaps = 31/335 (9%)

Query: 1   MKNPFASVASTLALVAALGAAVAPVIAHAA--PEEVT--YLLPAPPNAPAFAPWVLAQHK 56
           M   F    + L  +A L  +V+ + AHAA  PEE+   Y   +P +       ++ +H 
Sbjct: 1   MDRRFFIKNTALLTLAGLSTSVS-LSAHAAAAPEEIRLDYAYYSPTS-------LVLKHF 52

Query: 57  GYYADE----NLKVSFIVAKGGVDVAKQIGAGNAVIGGAIGDTPIVVRANGIPVKAIAVL 112
           G+  ++     +KV + +++G     + + A +   G   G   ++ RANG P+K++ V 
Sbjct: 53  GWLEEQVKSSGIKVKWTLSQGSNRALEYLSANSIDFGSTAGLAAVLSRANGNPIKSVYVY 112

Query: 113 GAGSVTMVAANPADGIKSLKDLKGKTVTVMSYTDTTYYAFLGSLKTAGLSRTDLQIQAAG 172
                T +       IK++ DLKGK +     TD  Y   L +LK  GL ++D++I    
Sbjct: 113 SRPEWTALLVPKDSPIKTVADLKGKKIAATKGTD-PYLFLLRTLKVNGLKKSDVEIVHLQ 171

Query: 173 PAGVWQLYTSGKSQAFAGV-PDWVVNASDAGAKLELLDNGGFKSMAQAILASDDTIKKNP 231
            A       SG+  A+AG+ P    +   AG++L L  N  F +    +  ++D  KK P
Sbjct: 172 HADGRAALESGRIDAWAGLDPHMASSELQAGSRL-LYRNVAFNTYG-FLNVTEDFAKKYP 229

Query: 232 ELLKRLVRATLRGMQDIMKDPKAAADDYVAALPSYKGKEASIQATFE--MYNKYVYANQK 289
           E +K++++A  R    I+ +P+ A+          +  EA I         N+  ++N  
Sbjct: 230 EQVKQVLQAYERARLWILANPREAS--------QIQADEAKISLAVAKVQLNRTDFSN-P 280

Query: 290 TLGQIDAARMEAVQKFYVSEGIVAKATPVNELFTN 324
            +G+     ++A     + E +V K T +N++  +
Sbjct: 281 YIGREHREALQAAAPILLQEDLVKKGTDLNKVIND 315


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 614,983
Number of extensions: 22984
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 247
Effective length of database: 910,473
Effective search space: 224886831
Effective search space used: 224886831
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)