BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1287.p (261 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bica... 169 2e-43 gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPa... 163 9e-42 gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 160 1e-40 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 154 5e-39 gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport sys... 154 6e-39 >gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 433 Score = 169 bits (428), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 96/233 (41%), Positives = 135/233 (57%), Gaps = 8/233 (3%) Query: 4 IEFRKVGKSFVDRQTAQA--RAAVSNVNLSIKSGEVVSIIGPSGCGKSTLLNMGAGLYLP 61 IE + V KSF QTA + + V+ ++ GE+V+++G SG GKSTLL + AGL Sbjct: 7 IELKGVDKSF---QTADGTPSSVLEQVDFTLTEGEIVALLGKSGSGKSTLLRIMAGLIPA 63 Query: 62 SEGEVFVGGEKVTKPVRKVAFMLQKDLLMPWRNIRANVTLGLEIDGMGQAERCRIADELL 121 G G+ + PV +A + Q L PW ++ NV LGLE G+ AER + AD +L Sbjct: 64 DSGSAMYRGKNIYGPVAGIAMVFQSFALFPWLTVQQNVELGLEAQGVPPAEREKRADAML 123 Query: 122 AKCHLKGFEEHYPYQLSGGMRQRAALARTLAVDPQVLLLDEPFSALDAQTKMVLQQDLAK 181 L GF P +LSGGM+QR +AR L P VLL+DE FSALD T L+ D+ + Sbjct: 124 DLIGLAGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILE 183 Query: 182 MLYEKQ---KTALFITHDLVEAIALSDRLLVMSERPGTIVEEIEVKLPHRDNP 231 M E + K L ++H++ EA+ +SDR++V+S PG I EI++ LP NP Sbjct: 184 MWEENRIPTKGILIVSHNIEEAVMMSDRIVVLSSSPGRIRSEIKIDLPRPRNP 236 >gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 246 Score = 163 bits (413), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 85/202 (42%), Positives = 126/202 (62%), Gaps = 1/202 (0%) Query: 25 VSNVNLSIKSGEVVSIIGPSGCGKSTLLNMGAGLYLPSEGEVFVGGEKVTKPVRKVAFML 84 + +++L+I++GE V+I+G SG GKSTLL AGL PS G+V + ++ R+ A + Sbjct: 22 IQDLSLTIEAGEFVAIVGGSGVGKSTLLRAAAGLIAPSSGDVQLKLPQLPGRRRR-AVVF 80 Query: 85 QKDLLMPWRNIRANVTLGLEIDGMGQAERCRIADELLAKCHLKGFEEHYPYQLSGGMRQR 144 Q L+PWR + NV GLE G+ E+ + L L F E +P+QLSGG QR Sbjct: 81 QDGRLLPWRTVADNVAYGLETLGISADEQQSRIKQALQLTGLAEFGERWPHQLSGGQVQR 140 Query: 145 AALARTLAVDPQVLLLDEPFSALDAQTKMVLQQDLAKMLYEKQKTALFITHDLVEAIALS 204 +AR LAV P +LL+DEPFSA+DA T+ LQ +L ++ Q +F+THD+ EA+ L+ Sbjct: 141 VGIARALAVQPDLLLMDEPFSAVDALTRRNLQAELIRIWQATQSAVMFVTHDIDEAVFLA 200 Query: 205 DRLLVMSERPGTIVEEIEVKLP 226 DR++V+ P T+VE + + LP Sbjct: 201 DRVIVLGGSPATVVENLRIDLP 222 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 160 bits (404), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 92/223 (41%), Positives = 130/223 (58%), Gaps = 4/223 (1%) Query: 4 IEFRKVGKSF-VDRQTAQARAAVSNVNLSIKSGEVVSIIGPSGCGKSTLLNMGAGLYLPS 62 I+ + V K F + QT QA + VNL+I GE V +IG SGCGKSTLL + AG S Sbjct: 14 IDIKGVSKVFSIGGQTVQA---LREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTS 70 Query: 63 EGEVFVGGEKVTKPVRKVAFMLQKDLLMPWRNIRANVTLGLEIDGMGQAERCRIADELLA 122 G + G + P + + Q L PW ++ N+ G + +A+ ++ Sbjct: 71 SGSANMYGMPIDGPSPERGMVFQDYGLFPWLTVKENIGFGQRQRNLPKAKLEELSAYYTD 130 Query: 123 KCHLKGFEEHYPYQLSGGMRQRAALARTLAVDPQVLLLDEPFSALDAQTKMVLQQDLAKM 182 L F +YP QLSGGM+QR A+AR LA D +VLL+DEPF ALDA T+ LQQDL ++ Sbjct: 131 MVGLTKFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKLQQDLLEI 190 Query: 183 LYEKQKTALFITHDLVEAIALSDRLLVMSERPGTIVEEIEVKL 225 + T +F+TH + EA+ LSDR++VM+ PG I E+I++ L Sbjct: 191 WERTKVTVVFVTHAVEEAVMLSDRVVVMTAGPGRIEEDIKLDL 233 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 154 bits (389), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 87/218 (39%), Positives = 126/218 (57%), Gaps = 15/218 (6%) Query: 1 MIEIEFRKVGKSFVDRQTAQARAAVSNVNLSIKSGEVVSIIGPSGCGKSTLLNMGAGLYL 60 M +E R + + F D V N++LSI++GE +++GPSGCGK+TLL M AG + Sbjct: 1 MALLEIRNLTRRFGDN------TVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDV 54 Query: 61 PSEGEVFVGGEKVT------KPVRKVAFMLQKDLLMPWRNIRANVTLGLEIDGMGQAERC 114 P G++ + G +T +PVR V Q L P + N+ LE+ +AE Sbjct: 55 PDAGQILLDGVDLTGVPPEQRPVRTV---FQNYALFPHMTVGGNIAFPLEMANTPKAEIQ 111 Query: 115 RIADELLAKCHLKGFEEHYPYQLSGGMRQRAALARTLAVDPQVLLLDEPFSALDAQTKMV 174 + DE L L GF YP++LSGG RQR ++AR L P++LLLDEP SALDAQ + Sbjct: 112 KKVDEALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQ 171 Query: 175 LQQDLAKMLYEKQKTALFITHDLVEAIALSDRLLVMSE 212 +Q +L + E T +++THD EA+ALS R+ VM++ Sbjct: 172 MQIELINLQKEVGITFIYVTHDQAEALALSHRIAVMNK 209 >gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 294 Score = 154 bits (389), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 82/200 (41%), Positives = 122/200 (61%), Gaps = 2/200 (1%) Query: 24 AVSNVNLSIKSGEVVSIIGPSGCGKSTLLNMGAGLYLPSEGEVFVGGEKVTKP-VRKVAF 82 A V+ + + ++GPSGCGKSTLL AG LP EGE+ + G+ VT P ++ Sbjct: 58 ATHRVSFDVHQADRFVLLGPSGCGKSTLLKAVAGFILPVEGEIRLDGKAVTAPGPDRIVV 117 Query: 83 MLQKDLLMPWRNIRANVTLGLEID-GMGQAERCRIADELLAKCHLKGFEEHYPYQLSGGM 141 + D L PW+ ++ NV L +G+ E A LAK L F + +P+QLSGGM Sbjct: 118 FQEFDQLSPWKTVKQNVIFPLLASRTLGRKEAEERALHYLAKVGLSKFSDVHPHQLSGGM 177 Query: 142 RQRAALARTLAVDPQVLLLDEPFSALDAQTKMVLQQDLAKMLYEKQKTALFITHDLVEAI 201 +QR A+AR LA+ P+VLL+DEPF+ALDA T+ +Q++L ++ E T LF+TH + EA+ Sbjct: 178 KQRVAIARALAMQPRVLLMDEPFAALDALTRRKMQEELLQLWDEVHFTLLFVTHSIEEAL 237 Query: 202 ALSDRLLVMSERPGTIVEEI 221 + +R+ ++S PG + EI Sbjct: 238 VVGNRIALLSPHPGRMRAEI 257 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 567,291 Number of extensions: 23102 Number of successful extensions: 250 Number of sequences better than 1.0e-08: 59 Number of HSP's gapped: 185 Number of HSP's successfully gapped: 62 Length of query: 261 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 180 Effective length of database: 921,564 Effective search space: 165881520 Effective search space used: 165881520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)