BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1286.p (224 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport s... 114 5e-27 gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate tr... 94 5e-21 gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type tr... 72 4e-14 gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport s... 62 4e-11 >gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 218 Score = 114 bits (285), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 71/205 (34%), Positives = 115/205 (56%), Gaps = 3/205 (1%) Query: 21 LLGGLWTTVWLSLLVIPIGVISGLLLALLATQSRSRTVRIAVAVYVDFFRSFPPLVLLIL 80 LL G WT V LSL+ +G + GLL+ T S+S +R +Y++ F+ P L+ L L Sbjct: 14 LLAGRWTVV-LSLVTFLLGGMLGLLILFFRT-SKSGALRNVARIYIEIFQGTPLLMQLFL 71 Query: 81 IYFGAPFLGLELPKLLAVALGFMFNNSSYFAEVLRAGIESVPSGQMEAARSTGLSRTQAL 140 ++FG G+E+P LA L ++S+ AE+ R +E++P GQ EA+ ++ Q + Sbjct: 72 VFFGIALFGIEVPAWLAAGLTLTLWSASFLAEIWRGCVEAIPRGQWEASSVLAMNYVQQM 131 Query: 141 AYVVVPQAVRNALPDLVGNGIEVIKLTTIASVVALPELLRVARDAQSLVYNPSPIVLAA- 199 YV++PQA+R ALP +G +++IK T + S++ EL + A + + P + AA Sbjct: 132 RYVILPQALRIALPPTIGFSVQIIKGTAVTSIIGFVELSKAATVITNATFMPFTVYAAAG 191 Query: 200 LLYLVLLLPLVRWLSRLEHRGRTSH 224 L Y +L PL R+ LE + +H Sbjct: 192 LFYFILCWPLSRYSQFLERKFHAAH 216 >gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate transport system permease protein [Janthinobacterium sp. Marseille] Length = 228 Score = 94.4 bits (233), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 119/220 (54%), Gaps = 11/220 (5%) Query: 10 NLEVYRQVLPFLLGGLWTTVWLSLLVIPIGVISGLLLALLATQSRSRTVRIAVAVYVDFF 69 + E+ + P+LL GL T+ L+++ GVI G LLA+ A S ++T+ + A YV+ Sbjct: 5 DFEIITRTWPYLLAGLQYTLQLTVVAAFGGVIFGTLLAM-ARLSSNKTLSLIAAAYVNLM 63 Query: 70 RSFPPLVLLILIYFGAPFL-----GLELPKLL----AVALGFMFNNSSYFAEVLRAGIES 120 RS P L+++ YF P + G E P L + + F+ ++YF E++RAGI+S Sbjct: 64 RSIPLLLVIFWFYFLMPIVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAGIQS 123 Query: 121 VPSGQMEAARSTGLSRTQALAYVVVPQAVRNALPDLVGNGIEVIKLTTIASVVALPELLR 180 + GQ+ A + GL+ Q++ VV+PQA RN LP L+ I + + ++ S++ + + + Sbjct: 124 ISKGQVNAGYALGLTYRQSMQLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVG 183 Query: 181 VA-RDAQSLVYNPSPIVLAALLYLVLLLPLVRWLSRLEHR 219 A + AQ + A++Y VL L + +L+ R Sbjct: 184 AAVKVAQRDSRVVEMYLFVAIVYFVLSFALSTLVKQLQKR 223 >gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type transport system permease protein [Janthinobacterium sp. Marseille] Length = 243 Score = 71.6 bits (174), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 103/216 (47%), Gaps = 23/216 (10%) Query: 21 LLGGLWTTVWLSLLVIPIGVISGLLLALLATQSRSRTVRIAVAVYVDFFRSFPPLVLLIL 80 LL GL T+ ++L + G ++ + T + VR+ A YV+ FR+ P LV + Sbjct: 21 LLSGLGWTLAVALFAWIFAFVVGSIVGVGRTSEKRWLVRLGGA-YVELFRNIPLLVQFFV 79 Query: 81 IYFGAPFLGLELPKLLA----------------VALGFMFNNSSYFAEVLRAGIESVPSG 124 YF P L +P + A V LGF SS AE +R+GI+++P G Sbjct: 80 WYFVVPGL---VPAVKAWVITLDPTEHQFVTAVVCLGFF--TSSRIAEQVRSGIQALPRG 134 Query: 125 QMEAARSTGLSRTQALAYVVVPQAVRNALPDLVGNGIEVIKLTTIASVVALPELLRVARD 184 Q A + GL+ Q YV++P A R +P L + +IK T +A + L EL R+ Sbjct: 135 QRNAGYALGLTTAQTYRYVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLVELFFRTRE 194 Query: 185 AQSLVYNPSPIVLAA-LLYLVLLLPLVRWLSRLEHR 219 + + AA L+Y+V+ + R ++ +E R Sbjct: 195 MGEMTFRYFEAFGAATLIYVVIAMTANRLMALVERR 230 >gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 223 Score = 61.6 bits (148), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 72/123 (58%) Query: 56 RTVRIAVAVYVDFFRSFPPLVLLILIYFGAPFLGLELPKLLAVALGFMFNNSSYFAEVLR 115 R +R V+ YV+ R+ P L+ L I+FG P +G+++ ++ A L + N +Y E++R Sbjct: 51 RWLRPVVSAYVELIRNTPFLIQLFFIFFGLPSIGVQITEMQAAILAMVINLGAYSTEIIR 110 Query: 116 AGIESVPSGQMEAARSTGLSRTQALAYVVVPQAVRNALPDLVGNGIEVIKLTTIASVVAL 175 AG+ +V GQ+EAA S ++R Q ++++ A++ P L + V+ + + S +A+ Sbjct: 111 AGVVAVARGQIEAALSLSMTRVQIFRHIILRPALQKIWPALSSQIVIVMLGSAVCSQIAV 170 Query: 176 PEL 178 EL Sbjct: 171 EEL 173 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.327 0.142 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 461,689 Number of extensions: 17900 Number of successful extensions: 113 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 109 Number of HSP's successfully gapped: 4 Length of query: 224 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 144 Effective length of database: 925,261 Effective search space: 133237584 Effective search space used: 133237584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)