BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1285.p (223 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate tr... 90 1e-19 gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type tr... 80 7e-17 gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport s... 75 4e-15 gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport s... 54 6e-09 >gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate transport system permease protein [Janthinobacterium sp. Marseille] Length = 228 Score = 89.7 bits (221), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 113/220 (51%), Gaps = 10/220 (4%) Query: 10 NAEIAARYWPDILRGMGVTVLLSLAVIVSGLLLGLLLAVLRATGKRGLVWLVVAFADVMR 69 + EI R WP +L G+ T+ L++ G++ G LLA+ R + + L + A+ ++MR Sbjct: 5 DFEIITRTWPYLLAGLQYTLQLTVVAAFGGVIFGTLLAMARLSSNKTLSLIAAAYVNLMR 64 Query: 70 ALPPLILIIVLFFAFPYI---------DLAMSSFTATWLALTLVLAAYAEESIWAGIASL 120 ++P L++I +F P + + + + + ++ + AAY E + AGI S+ Sbjct: 65 SIPLLLVIFWFYFLMPIVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAGIQSI 124 Query: 121 PRGQSEAARSTGLSWGQTMAAVILPQALRMAVPPLTNRVISITKNTALGSVVALSEILNT 180 +GQ A + GL++ Q+M V+LPQA R +P L + I + ++ +L S++ +++ + Sbjct: 125 SKGQVNAGYALGLTYRQSMQLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVGA 184 Query: 181 AQAASSNAGNPTPLMLGAA-AYLVIFIPVVLLARWLETRW 219 A + + L A Y V+ + L + L+ R+ Sbjct: 185 AVKVAQRDSRVVEMYLFVAIVYFVLSFALSTLVKQLQKRF 224 >gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type transport system permease protein [Janthinobacterium sp. Marseille] Length = 243 Score = 80.5 bits (197), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 88/170 (51%), Gaps = 11/170 (6%) Query: 20 DILRGMGVTVLLSLAVIVSGLLLGLLLAVLRATGKRGLVWLVVAFADVMRALPPLILIIV 79 +L G+G T+ ++L + ++G ++ V R + KR LV L A+ ++ R +P L+ V Sbjct: 20 SLLSGLGWTLAVALFAWIFAFVVGSIVGVGRTSEKRWLVRLGGAYVELFRNIPLLVQFFV 79 Query: 80 LFFAFP-----------YIDLAMSSFTATWLALTLVLAAYAEESIWAGIASLPRGQSEAA 128 +F P +D F + L ++ E + +GI +LPRGQ A Sbjct: 80 WYFVVPGLVPAVKAWVITLDPTEHQFVTAVVCLGFFTSSRIAEQVRSGIQALPRGQRNAG 139 Query: 129 RSTGLSWGQTMAAVILPQALRMAVPPLTNRVISITKNTALGSVVALSEIL 178 + GL+ QT V+LP A R+ +PPLT+ ++++ KNTA+ + L E+ Sbjct: 140 YALGLTTAQTYRYVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLVELF 189 >gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 218 Score = 75.1 bits (183), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 113/209 (54%), Gaps = 11/209 (5%) Query: 20 DILRGMGV----TVLLSLAVIVSGLLLGLLLAVLRATGKRGLVWLVVAFADVMRALPPLI 75 DILR + + TV+LSL + G +LGLL+ R + L + + ++ + P L+ Sbjct: 8 DILRNLLLAGRWTVVLSLVTFLLGGMLGLLILFFRTSKSGALRNVARIYIEIFQGTPLLM 67 Query: 76 LIIVLFFAFPYIDLAMSSFTATWLALTLVLAAYAEESIWAG-IASLPRGQSEAARSTGLS 134 + ++FF + + ++ A L LTL A++ E IW G + ++PRGQ EA+ ++ Sbjct: 68 QLFLVFFGIALFGIEVPAWLAAGLTLTLWSASFLAE-IWRGCVEAIPRGQWEASSVLAMN 126 Query: 135 WGQTMAAVILPQALRMAVPPLTNRVISITKNTALGSVVALSEILNTAQAASSNAGNPTPL 194 + Q M VILPQALR+A+PP + I K TA+ S++ E L+ A +NA P Sbjct: 127 YVQQMRYVILPQALRIALPPTIGFSVQIIKGTAVTSIIGFVE-LSKAATVITNA-TFMPF 184 Query: 195 MLGAAAYLVIFI---PVVLLARWLETRWR 220 + AAA L FI P+ +++LE ++ Sbjct: 185 TVYAAAGLFYFILCWPLSRYSQFLERKFH 213 >gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 223 Score = 54.3 bits (129), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 69/118 (58%) Query: 60 LVVAFADVMRALPPLILIIVLFFAFPYIDLAMSSFTATWLALTLVLAAYAEESIWAGIAS 119 +V A+ +++R P LI + +FF P I + ++ A LA+ + L AY+ E I AG+ + Sbjct: 56 VVSAYVELIRNTPFLIQLFFIFFGLPSIGVQITEMQAAILAMVINLGAYSTEIIRAGVVA 115 Query: 120 LPRGQSEAARSTGLSWGQTMAAVILPQALRMAVPPLTNRVISITKNTALGSVVALSEI 177 + RGQ EAA S ++ Q +IL AL+ P L+++++ + +A+ S +A+ E+ Sbjct: 116 VARGQIEAALSLSMTRVQIFRHIILRPALQKIWPALSSQIVIVMLGSAVCSQIAVEEL 173 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.327 0.137 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 389,520 Number of extensions: 11351 Number of successful extensions: 99 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 4 Length of query: 223 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 143 Effective length of database: 925,261 Effective search space: 132312323 Effective search space used: 132312323 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)