BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1284.p (249 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 239 8e-65 gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type tr... 235 2e-63 gi|152981146|ref|YP_001354830.1| cell division ATP-binding prote... 159 1e-40 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 158 4e-40 gi|152980377|ref|YP_001353978.1| ABC-type phosphate transport sy... 152 3e-38 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 239 bits (611), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 123/237 (51%), Positives = 159/237 (67%) Query: 6 PILEIVGLHKSYEGNTVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAGQIV 65 P++ I + KSY N VL+GI + V PG++I +IG SGSGKST+LRC N LE G I Sbjct: 2 PLIAIDNVKKSYGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSIS 61 Query: 66 VDGVDIMHARADLNAIRQKIGMVFQQFNLYPHMSVLGNVMLALKKVQKHSHAEAERRARR 125 V G + + +L +R K+GM+FQQFNL+PH+SV N+M++ V+ S +A A + Sbjct: 62 VAGSHLGKSELELRNLRLKVGMIFQQFNLFPHLSVGRNIMISPMIVKGVSEKDARALAMK 121 Query: 126 ALEQVGMLEKAAAFPGQLSGGQQQRVGIARGIALEPKVMLFDEPTSALDPELVGSVLQVM 185 LE+VG+ EK +FP QLSGGQQQRV IAR +++EP+ +L DE TSALDPELV VL V+ Sbjct: 122 NLEKVGLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVNEVLNVV 181 Query: 186 RQLREAGMTMLVVTHEMAFARAAADRVVFMDGGVIVEEGPPEQIFGNPQQARTKTFL 242 R L GMT+++VTHEM FAR DRVVFM G + E G PE IF NP K FL Sbjct: 182 RGLAHEGMTLIMVTHEMRFAREVCDRVVFMHQGKVHEIGAPEDIFANPATPELKQFL 238 >gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 235 bits (599), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 113/239 (47%), Positives = 161/239 (67%) Query: 7 ILEIVGLHKSYEGNTVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAGQIVV 66 ++E+ + K Y VL +V G ++ V GPSGSGKST+++ N LE G+I V Sbjct: 1 MIELDKVSKWYGNFQVLTDCTTQVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQQGKITV 60 Query: 67 DGVDIMHARADLNAIRQKIGMVFQQFNLYPHMSVLGNVMLALKKVQKHSHAEAERRARRA 126 DG+ + + +L+++R +IGMVFQ F L+PH+S+ N+ LA KV K S +A R + Sbjct: 61 DGISVGDPKTNLSSLRSRIGMVFQNFELFPHLSISENLTLAQVKVLKRSLPDATERGLKY 120 Query: 127 LEQVGMLEKAAAFPGQLSGGQQQRVGIARGIALEPKVMLFDEPTSALDPELVGSVLQVMR 186 L++VG++ FPGQLSGGQQQRV IAR ++++P MLFDEPTSALDPE++ VL VM Sbjct: 121 LDRVGLIAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV 180 Query: 187 QLREAGMTMLVVTHEMAFARAAADRVVFMDGGVIVEEGPPEQIFGNPQQARTKTFLARL 245 L + GMTM+VVTHEM FA+ A+RV+FMD G+IVE+ ++ FG + R + FLA++ Sbjct: 181 GLAQEGMTMMVVTHEMGFAKKVANRVIFMDKGLIVEDCTKDEFFGTTRSDRARDFLAKI 239 >gi|152981146|ref|YP_001354830.1| cell division ATP-binding protein FtsE [Janthinobacterium sp. Marseille] Length = 227 Score = 159 bits (403), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 93/219 (42%), Positives = 132/219 (60%), Gaps = 4/219 (1%) Query: 7 ILEIVGLHKSYEGN-TVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAGQIV 65 ++E + K Y N T L I L V G+L+ + GPSG+GKST+L+ +E PS G ++ Sbjct: 1 MIEFHQVSKKYTQNVTALSDISLSVGKGELVFLAGPSGAGKSTLLKLIAAMERPSEGSVI 60 Query: 66 VDGVDIMHARAD-LNAIRQKIGMVFQQFNLYPHMSVLGNVMLALKKVQKHSHAEAERRAR 124 V G DI + L +R+ +G++FQQ L SVL NVML L V S +AERRAR Sbjct: 61 VSGHDISRIKTSGLPYLRRNLGLIFQQQRLLADRSVLANVMLPLI-VCGASRPDAERRAR 119 Query: 125 RALEQVGMLEKAAAFPGQLSGGQQQRVGIARGIALEPKVMLFDEPTSALDPELVGSVLQV 184 AL++VG+L+ A++ P LSGG+QQRV IAR I P+++L DEPT+ LD VL Sbjct: 120 AALDKVGLLDMASSGPLTLSGGEQQRVAIARAIVNRPQIILADEPTANLDRAAANKVLDA 179 Query: 185 MRQLREAGMTMLVVTHEMAFARAAADRVVFMDGGVIVEE 223 ++ G+T L+ TH+ F A RV+++D G I+E Sbjct: 180 LKAFHSVGVTCLISTHDEQFLDTAT-RVIYLDHGRIIES 217 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 158 bits (399), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 87/237 (36%), Positives = 138/237 (58%), Gaps = 6/237 (2%) Query: 7 ILEIVGLHKSYEGNTVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAGQIVV 66 +LEI L + + NTV+ I L + G+ ++GPSG GK+T+LR + P AGQI++ Sbjct: 3 LLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQILL 62 Query: 67 DGVDIMHARADLNAIRQKIGMVFQQFNLYPHMSVLGNVMLALKKVQKHSHAEAERRARRA 126 DGVD+ + +R VFQ + L+PHM+V GN+ L+ + AE +++ A Sbjct: 63 DGVDLTGVPPEQRPVRT----VFQNYALFPHMTVGGNIAFPLE-MANTPKAEIQKKVDEA 117 Query: 127 LEQVGMLEKAAAFPGQLSGGQQQRVGIARGIALEPKVMLFDEPTSALDPELVGSV-LQVM 185 LE V + AA +P +LSGGQ+QRV IAR + PK++L DEP SALD +L + ++++ Sbjct: 118 LEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELI 177 Query: 186 RQLREAGMTMLVVTHEMAFARAAADRVVFMDGGVIVEEGPPEQIFGNPQQARTKTFL 242 +E G+T + VTH+ A A A + R+ M+ G + + P +I+ P+ F+ Sbjct: 178 NLQKEVGITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSYPRSRFVADFI 234 >gi|152980377|ref|YP_001353978.1| ABC-type phosphate transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 260 Score = 152 bits (383), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 135/245 (55%), Gaps = 11/245 (4%) Query: 8 LEIVGLHKSYEGNTVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAGQ---- 63 LEI L+ Y L+ I+L + ++ IGPSG GKST+LR NR+ + GQ Sbjct: 14 LEIANLNFFYGSFQGLKNINLDIHDKKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQRAEG 73 Query: 64 -IVVDGVDIMHARADLNAIRQKIGMVFQQFNLYPHMSVLGNVMLALKKVQKHSHAEAERR 122 I+ G +I+ D+N +R K+GMVFQ+ +P MSV N+ ++ + E + R Sbjct: 74 KIMYHGKNILEPGQDVNMLRAKVGMVFQKPTPFP-MSVYDNIAFGVRLYENLPKGEMDER 132 Query: 123 ARRALEQVGML----EKAAAFPGQLSGGQQQRVGIARGIALEPKVMLFDEPTSALDPELV 178 AL + + +K LSGGQQQR+ IARG+A++P V+L DEPTSALDP Sbjct: 133 VEWALNKAALWTEVKDKLHKSGLSLSGGQQQRLCIARGVAVKPDVLLLDEPTSALDPIST 192 Query: 179 GSVLQVMRQLREAGMTMLVVTHEMAFARAAADRVVFMDGGVIVEEGPPEQIFGNPQQART 238 + +++ +L+ T+ +VTH M A +D +M G +VE G +QIF NP + T Sbjct: 193 AKIEELISELK-GDYTIAIVTHNMQQAARCSDYTAYMYLGELVEFGETDQIFMNPNKKDT 251 Query: 239 KTFLA 243 + ++ Sbjct: 252 QDYIT 256 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 518,966 Number of extensions: 19017 Number of successful extensions: 262 Number of sequences better than 1.0e-08: 63 Number of HSP's gapped: 168 Number of HSP's successfully gapped: 68 Length of query: 249 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 168 Effective length of database: 921,564 Effective search space: 154822752 Effective search space used: 154822752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)