BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1283.p
         (290 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981681|ref|YP_001351726.1| ABC transporter substrate bindi...    76   2e-15

>gi|152981681|ref|YP_001351726.1| ABC transporter substrate binding
           protein [Janthinobacterium sp. Marseille]
          Length = 259

 Score = 76.3 bits (186), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 101/232 (43%), Gaps = 6/232 (2%)

Query: 32  MAQSGPLRTGVDATFAPHAMVKLGGGLQGFNIDLGEELARRLGRKIEIEGTEFSGLVPGL 91
           + + G LR  V   F P   V      QG +ID+   +A++LG K+E+     +  +P L
Sbjct: 29  IQKKGVLRVAVPQDFPPFGSVTTDMTPQGLDIDVATLIAKKLGVKVELIPVTSANRIPYL 88

Query: 92  NAKKYDFVLAPVTATPERAKSMLFTEGYLDTDYTFVIKKGTAPIHALEDLKGKTISVNKG 151
             KK D V++ +   PER K + F+  Y    +  V       + A  DL GKTI V +G
Sbjct: 89  QTKKVDLVISSMGKNPEREKVIDFSAAYAPF-FNGVFGPADQKVAAPADLAGKTIGVTRG 147

Query: 152 SAYELWARDNASKYGFKYDVYGNNADAVQAVQSGRADANLAGSTVAAWAAKQNPA--VQT 209
           S  +L     A +       Y +N   + +  S +      G+ +AA    +NP    +T
Sbjct: 148 SVEDLELSKIAPESA-TIKRYEDNNGTISSFLSNQVQLVATGNVIAAAIIAKNPPKKPET 206

Query: 210 TYTVKTGLVWALAFRLDDKAGRDAAGMALKCMKQDGTLGKIAQKWFGYTPAP 261
            + +K     ++     ++   +     +   K+DG+L  + +KW G  P P
Sbjct: 207 KFLIKNS-PCSIGLNKGEEKLLEKVNAIIAQAKKDGSLNTLTEKWLGL-PLP 256


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 627,556
Number of extensions: 25200
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 208
Effective length of database: 917,867
Effective search space: 190916336
Effective search space used: 190916336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)