BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1281.p
         (490 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981059|ref|YP_001354636.1| dihydroorotase, multifunctional...    67   2e-12

>gi|152981059|ref|YP_001354636.1| dihydroorotase, multifunctional
           complex type [Janthinobacterium sp. Marseille]
          Length = 427

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 104/227 (45%), Gaps = 14/227 (6%)

Query: 216 LAEAEASHRAIALSRLIGVPVLIVHVAGAETVQTIRNARLLGAQIYAESCPQYLFLTAED 275
           +AE  A H  + L R+ G  V +  ++ A  ++ +R A+  G  +  +    ++ LT  D
Sbjct: 209 MAETVALHTILELVRVTGTRVHLCRMSTAAGLELVRAAKKEGLPVSCDVGAHHVHLTEND 268

Query: 276 IDLPGVEGAKYCCSPPPRDANAQEAVWAGLKDGTLGMYSSDHAPYRFDESGKLPRGEDTT 335
           I   G   +    +PP R    ++A+   L DGT+    SDH P   DE   LP      
Sbjct: 269 I---GFFDSNARLTPPLRSQRDRDAIRNALLDGTIDAICSDHTPVDDDEK-LLP------ 318

Query: 336 FKEMANGVPGIELRLPLL--FSEGVQKGRIDIHEFVRLTATNHAHMYGLSHCKGNIAEGL 393
           F E + G  G+EL L L   ++E    G+  +   V    T+ A + GL    G ++ G 
Sbjct: 319 FGEASPGATGLELLLSLALKWAEDCVDGKQQVARAVAKVTTDAARIVGLP--SGQLSVGS 376

Query: 394 DADLVIWNPERETTITAALLHDNVGYTPYEGRQIKGWPEVVISRGRV 440
            AD+ +++P    T+ A +L     +TP+ G ++ G  +  I  G +
Sbjct: 377 VADICLFDPNERWTVAAKVLASQGKHTPFLGYELAGQVKTTIVAGHI 423


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,247,965
Number of extensions: 55725
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 403
Effective length of database: 899,382
Effective search space: 362450946
Effective search space used: 362450946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)