BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1280.p (259 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982386|ref|YP_001352240.1| short chain dehydrogenase/reduc... 367 e-103 gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Jant... 92 4e-20 gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 86 2e-18 gi|152981549|ref|YP_001352605.1| glucose-1-dehydrogenase, (3-oxo... 72 4e-14 gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reduc... 69 2e-13 >gi|152982386|ref|YP_001352240.1| short chain dehydrogenase/reductase family oxidoreductase [Janthinobacterium sp. Marseille] Length = 259 Score = 367 bits (943), Expect = e-103, Method: Compositional matrix adjust. Identities = 182/259 (70%), Positives = 210/259 (81%) Query: 1 MDLGISGRRALVCASSKGLGLACAISLAREGVAVTMTARGAEVLEAAAQQVRAATGATVT 60 MDLGI G+ ALVC +S+GLG CA +LA EGV VT+ AR EVL+A+A ++RA + + +T Sbjct: 1 MDLGIRGKSALVCGASRGLGRGCAEALAAEGVNVTLVARNLEVLQASATEIRAVSDSMIT 60 Query: 61 TVAGDITTPEGRALALAACPAPDILVTNAGGPKPGDFREWSREDWIAAIDANMLTPIALI 120 VA DITT EGR ALA CP PDILVTNA GP GDFR+WSR+DWIAA+DANMLTPI LI Sbjct: 61 IVACDITTAEGREQALAVCPQPDILVTNASGPPTGDFRDWSRDDWIAALDANMLTPIELI 120 Query: 121 KATVDGMMQRGFGRIVNITSGAVKAPIDILGLSNGARSGLTGFVAGLARTTVAHNVTINN 180 KATVDGMM RGFGRI+NITS AVKAPID LGLSNGARSGLTGFVAGLAR TVA NVTINN Sbjct: 121 KATVDGMMARGFGRIINITSSAVKAPIDSLGLSNGARSGLTGFVAGLARKTVARNVTINN 180 Query: 181 LLPGPFETERLLTTAAASARGSGKSTEQVLAARRAANPARRFGQPAEFGDACAWLCSAQA 240 LLPGPFET+RL +A+A SG++ E+V A RRAANPA+RFG EFG CA+LCS A Sbjct: 181 LLPGPFETDRLAAIFSAAAEASGRTVEEVSAVRRAANPAKRFGTRQEFGATCAFLCSEHA 240 Query: 241 GFVTGQNLLMDGGAYPGTF 259 G++ GQN+L+DGG YPGTF Sbjct: 241 GYINGQNILLDGGGYPGTF 259 >gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Janthinobacterium sp. Marseille] Length = 246 Score = 91.7 bits (226), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 112/255 (43%), Gaps = 20/255 (7%) Query: 8 RRALVCASSKGLGLACAISLAREGVAVTMTARGAEVLEAAAQQVRAATGATVTTVAGDIT 67 R ALV GLG A I LA G V T ++ +G D++ Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPGNKKADEWLKLMKESGYDFHAYPCDVS 62 Query: 68 TPEGRALALAACPAP----DILVTNAGGPKPGDFREWSREDWIAAIDANMLTPIALIKAT 123 + +A D+LV NAG + F++ + DW A + N+ + + K Sbjct: 63 DYDSAQQCVAQIEKEMGPVDVLVNNAGITRDITFKKMGKPDWDAVMATNLDSVFNMTKPV 122 Query: 124 VDGMMQRGFGRIVNITSGAVKAPIDILGLSN--GARSGLTGFVAGLARTTVAHNVTINNL 181 DGM++RG+GRI+NI+S V G +N A++G+ GF LA VT+N + Sbjct: 123 CDGMVERGWGRIINISS--VNGQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTI 180 Query: 182 LPGPFETERLLTTAAASARGSGKSTEQVLAARRAAN-PARRFGQPAEFGDACAWLCSAQA 240 PG T+ ++ + VL + P R G+P E A+L S +A Sbjct: 181 SPGYIGTKMVMAIP-----------QDVLDTKIVPQIPMGRLGKPEEIAGLVAYLASDEA 229 Query: 241 GFVTGQNLLMDGGAY 255 F+TG N+ ++GG + Sbjct: 230 AFLTGANIAINGGQH 244 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 85.9 bits (211), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 82/258 (31%), Positives = 119/258 (46%), Gaps = 25/258 (9%) Query: 5 ISGRRALVCASSKGLGLACAISLAREGVAVTMTARGAEVLEAAAQQVRAATGATVTTVAG 64 +SG+ ALV +S+G+G A A LA+ G V TA E+ A + G V Sbjct: 6 LSGQVALVTGASRGIGRAIAQELAKLGAKVIGTATS----ESGAAAISEYLGNGGKGVVL 61 Query: 65 DITTPEGRALAL-----AACPAPDILVTNAGGPKPGDFREWSREDWIAAIDANMLTPIAL 119 D+ R++AL A ILV NAG + E+W + I N+ L Sbjct: 62 DVNDA-ARSVALIDEIQKEFGAVSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAVGRL 120 Query: 120 IKATVDGMMQRGFGRIVNITSGAVKAPIDILGLSN--GARSGLTGFVAGLARTTVAHNVT 177 +A + GMM+ GRI+NITS V G N A++G+ G LAR + N+T Sbjct: 121 SRAVLRGMMKAKTGRIINITS--VVGSSGNAGQMNYAAAKAGVAGMSRALAREIGSRNIT 178 Query: 178 INNLLPGPFETERLLTTAAASARGSGKSTEQVLAARRAANPARRFGQPAEFGDACAWLCS 237 +N + PG +T+ T +EQ +AA P R G P + A ++L S Sbjct: 179 VNCIAPGFIDTDMTKTL-----------SEQQIAALLQQVPLGRLGVPEDIAAAVSFLAS 227 Query: 238 AQAGFVTGQNLLMDGGAY 255 QA ++TG L ++GG Y Sbjct: 228 PQASYITGTTLHVNGGMY 245 >gi|152981549|ref|YP_001352605.1| glucose-1-dehydrogenase, (3-oxoacyl-(acyl carrier protein) reductase) [Janthinobacterium sp. Marseille] Length = 254 Score = 72.0 bits (175), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 79/262 (30%), Positives = 117/262 (44%), Gaps = 22/262 (8%) Query: 5 ISGRRALVCASSKGLGLACAISLAREGVAVTMTARGAEVLEAAAQQVRAATGATVTTVAG 64 S + A+V S G+G A L G +V + R L AA+++ G V VAG Sbjct: 4 FSSKVAIVTGGSSGIGKEVAKRLVAAGASVVIGGRDEAKLANAAREI----GGKVLYVAG 59 Query: 65 DITTPE-GRALALAACPA---PDILVTNAGGPKPGDFREWSREDWIAAIDANMLTPIALI 120 DI P +AL AA A DIL+ NAG KP F E +++ +D + + Sbjct: 60 DIALPSTAKALVAAATDAFGGVDILINNAGVFKPKAFLEVDEQEYSWFLDTILKGKFFMA 119 Query: 121 KATVDGMMQRGFGRIVNITSGAVKAPIDILGLS-----NGARSGLTGFVAGLARTTVAHN 175 +A M RG G IV +G++ A I +G + + A +G+ LA N Sbjct: 120 QAAAKAMQLRGGGAIVQ--TGSLWA-IQAIGATPSAAYSAANAGVHALTRNLAIELAPFN 176 Query: 176 VTINNLLPGPFETERLLTTAAASARGSGKSTEQVLAARRAANPARRFGQPAEFGDACAWL 235 + IN + P ET T + + L + A +P R GQPA+ +A +L Sbjct: 177 IRINTVAPAVVETPVYNTFM------TDDQVKDTLPSFNAFHPLGRNGQPADVAEAMLFL 230 Query: 236 CSAQAGFVTGQNLLMDGGAYPG 257 S+ A ++TG L +DGG G Sbjct: 231 ASSSASWITGTVLPVDGGVTAG 252 >gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reductase family oxidoreductase [Janthinobacterium sp. Marseille] Length = 249 Score = 69.3 bits (168), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/269 (26%), Positives = 115/269 (42%), Gaps = 49/269 (18%) Query: 5 ISGRRALVCASSKGLGLACAISLAREGVAVTMT-ARGAEVLEAAAQQVRAATGATVTTVA 63 ++G+ A V S+G+G A LAR+G AV T A+ +A AQ++ AA G Sbjct: 7 LTGKVAFVQGGSRGIGAAIVKRLARDGAAVAFTYVSSADKAKAVAQEIEAAGG------- 59 Query: 64 GDITTPEGRALALAACPAP------------------DILVTNAGGPKPGDFREWSREDW 105 RALA+ A + DILV NAG ++ ED+ Sbjct: 60 --------RALAIHADSSDASAVQQAIQAAAKAFGRIDILVNNAGVLALAPVEDFKLEDF 111 Query: 106 IAAIDANMLTPIALIKATVDGMMQRGFGRIVNI-TSGAVKAPIDILGLSNGARSGLTGFV 164 + N+ + + M + G RI+ I ++ A + P + +++ + G Sbjct: 112 DRTVAVNVRSVFVATQEAARHMGEGG--RIITIGSTNADRMPFAGGAVYAMSKAAIVGLT 169 Query: 165 AGLARTTVAHNVTINNLLPGPFETERLLTTAAASARGSGKSTEQVLAARRAANPARRFGQ 224 GLAR +T+NN+ PGP +T+ A T + L A R+G+ Sbjct: 170 KGLARDLGPRGITVNNVQPGPVDTDM------NPANSDFADTLKGLMA------IGRYGK 217 Query: 225 PAEFGDACAWLCSAQAGFVTGQNLLMDGG 253 E A+L +AG++TG +L +DGG Sbjct: 218 DEEIASFVAYLAGPEAGYITGASLTIDGG 246 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.132 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 575,709 Number of extensions: 21383 Number of successful extensions: 147 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 128 Number of HSP's successfully gapped: 16 Length of query: 259 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 178 Effective length of database: 921,564 Effective search space: 164038392 Effective search space used: 164038392 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)