BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1279.p
         (313 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980584|ref|YP_001352972.1| dihydrodipicolinate synthase [J...    72   4e-14
gi|152981176|ref|YP_001353492.1| dihydrodipicolinate synthase [J...    70   2e-13

>gi|152980584|ref|YP_001352972.1| dihydrodipicolinate synthase
           [Janthinobacterium sp. Marseille]
          Length = 292

 Score = 72.0 bits (175), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 2/151 (1%)

Query: 23  TPFHADGTLDLGSIATLVEFQIEAGVSGLAILGFLGEAHKLSNAERRAVTSTFVKCAAGR 82
           TP HADG+LDL  +  L+++ I  G  G+ I+G  GE+  +S  E   +    V+  A R
Sbjct: 11  TPMHADGSLDLPGLRKLIDWHIAEGTDGIVIVGTTGESPTVSVDEHCELIRVAVEHTAKR 70

Query: 83  VPVWVGVRALGLAGAIEQATEAAEAGA-AAVFAAP-LDMASDAVQFDYYKSLAAALAIPV 140
           VPV  G      + AIE    A + GA A++   P  +  +    + ++K +A A+ +PV
Sbjct: 71  VPVIAGTGGNSTSEAIELTQFAKDVGADASLQVVPYYNRPTQEGMYQHFKKIAEAVDLPV 130

Query: 141 VIHDFPDSFGTEIKAEVIARLGREGGVNFIK 171
           ++++ P     ++  + I RL +  G+  +K
Sbjct: 131 ILYNVPGRTVADMSNDTIVRLSKVPGIIGVK 161


>gi|152981176|ref|YP_001353492.1| dihydrodipicolinate synthase
           [Janthinobacterium sp. Marseille]
          Length = 317

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 114/250 (45%), Gaps = 12/250 (4%)

Query: 16  GVYTICPTPFHADGTLDLGSIATLVEFQIEAGVSGLAILGFLGEAHKLSNAERRAVTSTF 75
           G++    TPF  +G +DL     L +  I  G+ GL + G  GEA  L + E+  + +  
Sbjct: 6   GIWVPIVTPFK-NGEVDLPVAQKLADELINQGIHGLVVCGTTGEAAALDDIEQATLLAAI 64

Query: 76  VKCAAGRVPVWVGVRALGLAGAIEQATE-AAEAGAAAVFAAPLDM-ASDAVQFDYYKSLA 133
            + A  R P+ +G+         E+       A AA + +AP  +  S      +++++A
Sbjct: 65  NEVADKRCPLAMGISGSSTRTVAEKVKRFNRHAPAAYLLSAPSYVRPSQQGILWHFQAVA 124

Query: 134 AALAIPVVIHDFPDSFGTEIKAEVIARLGREGGVNFIKMEEPPVGQKISRIRDLAGES-M 192
           A    P++I++ P   G  I+A  IA L ++     +K      GQ +S+++D+   + +
Sbjct: 125 AQTEAPIIIYNIPARTGVNIEAATIAALAQDERFAAVKESS---GQ-LSQVKDILDHTRL 180

Query: 193 RIFGGLGGVYFLEELQRGAVGTMTGFAF--PEILVRIYDQFAAGDLAGAAATFDQYCPLI 250
           ++  G      L  L  G  G ++  A   P++ V +YD    G    AA  F+   PLI
Sbjct: 181 QLLSG-DDALLLSTLMLGGHGAISAAAHIRPDLFVHLYDLTRTGRNEEAAELFNALLPLI 239

Query: 251 RYEF-QPKIG 259
           R  F +P  G
Sbjct: 240 RLLFSEPNPG 249


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.138    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 635,735
Number of extensions: 23709
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 2
Length of query: 313
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 230
Effective length of database: 914,170
Effective search space: 210259100
Effective search space used: 210259100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)