BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1278.p (314 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981488|ref|YP_001352078.1| LysR family transcriptional reg... 82 4e-17 gi|152980807|ref|YP_001354140.1| transcriptional regulator CysB-... 82 6e-17 gi|152982492|ref|YP_001352911.1| LysR family transcriptional reg... 73 2e-14 gi|152981629|ref|YP_001351947.1| cys regulon transcriptional act... 70 2e-13 gi|152979818|ref|YP_001353268.1| LysR family transcriptional reg... 70 2e-13 >gi|152981488|ref|YP_001352078.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 326 Score = 82.4 bits (202), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 70/283 (24%), Positives = 118/283 (41%), Gaps = 2/283 (0%) Query: 5 LRQIEVFRAVMTTGSISGASQLLFVSQPAVSRLLSHTEQRVGFALFERIKGRLYATPEAK 64 LRQ++VF V S S A++ L ++QPAVS + E+ G ALFE++ ++Y TP Sbjct: 6 LRQLKVFETVARHLSFSRAAEELHLTQPAVSTQVKKLEEHAGLALFEQLGKKIYLTPGGS 65 Query: 65 KLFHEVEHVYQAVQRVNELATDLSENRSGILNIVSSPSIGQMLIPQAIALFRNRHPEVKL 124 +L H + Q Q + T G LN V+ S G P+ + F H V L Sbjct: 66 ELLHYSRTIIQQFQEAEDAMTQFKGITGGKLN-VAVISAGDYFFPRLLVEFARSHQGVTL 124 Query: 125 TFHCLNYGYLKDRLLARQADLGIIILPMEHPSLQVTPLCSNRLVCVLPYNHELTRRGTLS 184 N L +++ + D+ I++ P + V V +H L + + Sbjct: 125 NLSVHNREGLLNQMTSNLTDIAIMVRPPTDMDTINEAFAPHPYVIVAAPDHPLVSQKNIP 184 Query: 185 LADLRPFPLISYNRDSPFGGIVGRFYQSEEEPLRPIMEVGSPQNACSLVQMGAGVALVDE 244 ++ L P + + S + + + ME+ S + V G GV+ + Sbjct: 185 MSRLMQEPFVVREKGSDTWHSMEDGFGDRINDINVAMEIRSTETIKQAVIAGMGVSFLSA 244 Query: 245 FSVRSWAGANQMVVRPVARAPI-LRANLVHVRTEPLSQLTQAF 286 ++ A + V V P+ L +VH + + L + QAF Sbjct: 245 HTISLELQAGSLAVLDVEGFPVMLNWYIVHRKNKRLPPVAQAF 287 >gi|152980807|ref|YP_001354140.1| transcriptional regulator CysB-like protein [Janthinobacterium sp. Marseille] Length = 313 Score = 81.6 bits (200), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 61/245 (24%), Positives = 116/245 (47%), Gaps = 7/245 (2%) Query: 3 LNLRQIEVFR-AVMTTGSISGASQLLFVSQPAVSRLLSHTEQRVGFALFERIKGRLYATP 61 +NL Q+ R AV +++ A++ LF SQP VS+ + E+ +G +F R R+ Sbjct: 1 MNLHQLRFVREAVRQNFNLTEAAKALFTSQPGVSKAIIELEEELGVDIFSRHGKRIRGLT 60 Query: 62 E-AKKLFHEVEHVYQAVQRVNELATDLSENRSGILNIVSSPSIGQMLIPQAIALFRNRHP 120 E + + VE + Q + + + + + + SG I ++ + + +P+ + F + P Sbjct: 61 EPGRAVLKSVELIMQEIDGLKRIGNEFAAHDSGSFTIATTHTQARYSLPKVVQAFTQKFP 120 Query: 121 EVKLTFHCLNYGYLKDRLLARQADLGIIILPMEH-PSLQVTPLCSNRLVCVLPYNHELTR 179 +V+L+ N + D +L QADL I + L P V+P +H L + Sbjct: 121 KVRLSLLQGNPKQVADMVLMDQADLAIATESIASIEGLISLPCYQWEHQVVVPVDHPLLK 180 Query: 180 RGTLSLADLRPFPLISYNRDSPFGGIVGRFYQSEEEPLRP--IMEVGSPQNACSLVQMGA 237 +++L +L +PLI+Y DS F G + L+P ++E + V++G Sbjct: 181 SKSITLEELTAYPLITY--DSAFAGRNKIDHAFALRNLKPDILLEAIDADVIKTYVELGM 238 Query: 238 GVALV 242 G+ ++ Sbjct: 239 GIGII 243 >gi|152982492|ref|YP_001352911.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 73.2 bits (178), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 108/252 (42%), Gaps = 20/252 (7%) Query: 1 MALNLRQIEVFRAVMTTGSISGASQLLFVSQPAVSRLLSHTEQRVGFALFERIKGRLYAT 60 M + LRQ+ F V TG + A++LL VSQ ++S L+ E +G LF+R RL T Sbjct: 1 MNITLRQLRAFVTVAETGKFTLAAELLGVSQSSLSLLVRDLENLLGLRLFDRHTRRLELT 60 Query: 61 PEAKKLFHEVEHVYQAVQRVNELATDLSENRSGILNIVSSPSIGQMLIPQAIALFRNRHP 120 L + + V E + DL + G + I + +IP + F R+P Sbjct: 61 DAGHDLLPVAQKTLMDLLSVVENSRDLLALKKGRVTIAAGSLHAATVIPDLLKSFNRRYP 120 Query: 121 EVKLTFHCLNYGYLKDRLLARQADLGIIILPMEHPSLQVTPLCSNRLVCVLPYNHELTRR 180 +++ + +++ ++A D+GI + S+ + ++ ++ H+L R+ Sbjct: 121 GIRVIVEDVAERQVRELIVAGTVDVGIGMTLDGDNSMLAQVIGRDKYAVLMHKEHQLMRK 180 Query: 181 GTLSLAD--------LRPFPLISYNRDSPFG--GIVGRFYQSEEEPLRPIMEVGSPQNAC 230 T++ D L+P LI D GI L P EV P Sbjct: 181 KTITWQDIAATQPILLKPPSLIRTYLDQHLARVGIT----------LTPAYEVALPWTMT 230 Query: 231 SLVQMGAGVALV 242 +V+ G GVA+V Sbjct: 231 GMVRAGVGVAIV 242 >gi|152981629|ref|YP_001351947.1| cys regulon transcriptional activator [Janthinobacterium sp. Marseille] Length = 304 Score = 69.7 bits (169), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 94/198 (47%), Gaps = 3/198 (1%) Query: 3 LNLRQIEVFR-AVMTTGSISGASQLLFVSQPAVSRLLSHTEQRVGFALFERIKGRLYATP 61 +N +Q+ R A+ +++ + +L+ SQ VS+ + E +G LF R RL + Sbjct: 1 MNFQQLRFVREAIRNNLNLTEVAAVLYTSQSGVSKQIKDLEDELGIDLFVRSGKRLTSVT 60 Query: 62 EAKKLFHE-VEHVYQAVQRVNELATDLSENRSGILNIVSSPSIGQMLIPQAIALFRNRHP 120 A E V+ + + + A+ S +G L I ++ + + +P+ + F N P Sbjct: 61 RAGDGAVEIVKRILLETENLRRYASQYSGVDTGQLIIAATHTQARYTLPRVVEQFNNEFP 120 Query: 121 EVKLTFHCLNYGYLKDRLLARQADLGIIILPMEH-PSLQVTPLCSNRLVCVLPYNHELTR 179 +VKL H + + +AD+GI ++ P + P S ++P H LT+ Sbjct: 121 KVKLELHQGTPNQVAAMISNGEADIGIASEVLDQSPDILAYPCFSWNHQVIVPLGHPLTK 180 Query: 180 RGTLSLADLRPFPLISYN 197 + ++L D+ +PLI+YN Sbjct: 181 KAPVTLEDIAQYPLITYN 198 >gi|152979818|ref|YP_001353268.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 69.7 bits (169), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/247 (23%), Positives = 102/247 (41%), Gaps = 6/247 (2%) Query: 1 MALNLRQIEVFRAVMTTGSISGASQLLFVSQPAVSRLLSHTEQRVGFALFERIKGRLYAT 60 M +L + + A+ GS+S A+ ++ A S L H EQR G LF+R ++ T Sbjct: 1 MHFDLIDLRLLVAIADAGSLSKAAASFPIALSAASNRLRHFEQRSGLTLFQRSAEGMHLT 60 Query: 61 PEAKKLFHEVEHVYQAVQRVNELATDLSENRSGILNIVSSPSIGQMLIPQAIALFRNRHP 120 P + + HV + + + DL+ R L + + +P A+ F +P Sbjct: 61 PAGRLVLDRARHVLLETENLKDTLRDLTGQRRITLRLAGTTVANSTFLPAALGPFLADYP 120 Query: 121 EVKLTFHCLNYGYLKDRLLARQA---DLGIIILPMEHPSLQVTPLCSNRLVCVLPYNHEL 177 E+ L L D LLA Q+ ++G++ + + P ++LV ++P H L Sbjct: 121 EIDLQ---LVEHKSADVLLAVQSGEVEVGVLDGNLATSDVIPLPFRHDKLVLLVPSGHAL 177 Query: 178 TRRGTLSLADLRPFPLISYNRDSPFGGIVGRFYQSEEEPLRPIMEVGSPQNACSLVQMGA 237 R ++ L D F + + + PLR + S LV A Sbjct: 178 AERPSVQLKDALGFAFVCLPPERAMQRFIEEMAVQNSRPLRVRVRAPSFYAIAQLVAEQA 237 Query: 238 GVALVDE 244 G+A++ E Sbjct: 238 GIAMLPE 244 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 705,772 Number of extensions: 28648 Number of successful extensions: 121 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 112 Number of HSP's successfully gapped: 17 Length of query: 314 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 231 Effective length of database: 914,170 Effective search space: 211173270 Effective search space used: 211173270 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)