BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1276.p (471 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980854|ref|YP_001353872.1| FAD/FMN-containing dehydrogenas... 472 e-134 gi|152979945|ref|YP_001352025.1| glycolate oxidase (fad-linked s... 139 4e-34 gi|152981534|ref|YP_001352125.1| glycolate oxidase subunit [Jant... 93 3e-20 >gi|152980854|ref|YP_001353872.1| FAD/FMN-containing dehydrogenase [Janthinobacterium sp. Marseille] Length = 468 Score = 472 bits (1214), Expect = e-134, Method: Compositional matrix adjust. Identities = 239/465 (51%), Positives = 311/465 (66%), Gaps = 1/465 (0%) Query: 8 LIQQLRSIVGDAGLVTAAEEQASYVKDWLNKWHGRVAVVVRPADTAQTAEVVRLCHQTHT 67 + R +G ++T A + A Y+ DW ++ G+ V++PADT + A +VRLC++ Sbjct: 4 FLDACRRAIGATHVLTEAADTAPYLTDWRRRFTGKARAVLKPADTQELATLVRLCNEYKV 63 Query: 68 PIVTQGGNTGMSGGATPDDSGAQVIVSTTRMNRIRAVDPINNTMTVDAGVLLAHAQEAAR 127 P+V QGGNTG+ G PD+SG I+S TR+NRIR VDP+NNT+TV+AG +L + Q AA Sbjct: 64 PMVPQGGNTGLVLGGIPDESGTAAILSLTRLNRIRHVDPLNNTVTVEAGCILKNIQAAAS 123 Query: 128 AAGRYFPLSLGAEGSCTVGGNLATNAGGIAVLRFGNMRELALGLEVVLPDGRVWNGLRGL 187 AGR FPLSL AEGSCT+GGNL+TNAGG AVLR+GN REL LGLEVV P G +W+GLRGL Sbjct: 124 DAGRLFPLSLAAEGSCTIGGNLSTNAGGTAVLRYGNTRELCLGLEVVTPQGDIWHGLRGL 183 Query: 188 RKDNTGYDLRDLFIGSEGTLGVITGAVLKLFSQPHARATAWVGSDSLAQLAELLARTRAR 247 RKDNTGYDLRDL+IG+EGTLG IT AVLKLF QP A+ TA + LL+ ++ Sbjct: 184 RKDNTGYDLRDLYIGAEGTLGFITAAVLKLFPQPRAQLTALAALRTPDDALRLLSLAQSY 243 Query: 248 CGDRLVAFEMMSAASLALVLQHVTDTRAPLAQPAHYNALIELADTE-DVGLQAMLEELLG 306 C L FE+MS L LV +H D R P A+ L+EL+D+E + Q MLE ++ Sbjct: 244 CVSALTGFELMSGFCLRLVNRHFPDMRLPFAEEHPQYVLLELSDSESEEHAQTMLEHVIS 303 Query: 307 QAMEDGLVGDAMLCTSGTQAAALWKIREGISQAQVRAGKVIKHDIALPISAIAGFVDEAE 366 AM+ L+ DA++ S Q+ A+W IRE I AQ GK IKHD++LPIS IA F+ + Sbjct: 304 TAMQQDLIQDAIVARSLAQSKAIWDIREHIPLAQAAEGKNIKHDVSLPISRIADFIRTTD 363 Query: 367 ALIAGCGLQAEIINFGHLGDGNLHFNVMIPLSSSYEEVKQATLQLNRLVHDLVTEQQGSI 426 AL+ A ++ FGHLGDGNLH+NV P + + Q +NR+VHD V + GSI Sbjct: 364 ALLQQAFPGARMVTFGHLGDGNLHYNVAHPEQETDQSFLQKQTAVNRVVHDSVHQHGGSI 423 Query: 427 SAEHGVGQLRRDELQHYKSPLEMELMLRIKQAFDPNLIMNPGKLL 471 SAEHG+G L+R E+ YKS +EM+LM IKQA DP +MNPGKL+ Sbjct: 424 SAEHGIGALKRTEILRYKSDVEMQLMRTIKQALDPLNLMNPGKLI 468 >gi|152979945|ref|YP_001352025.1| glycolate oxidase (fad-linked subunit) oxidoreductase protein [Janthinobacterium sp. Marseille] Length = 495 Score = 139 bits (350), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 133/472 (28%), Positives = 212/472 (44%), Gaps = 28/472 (5%) Query: 6 QQLIQQLRSIVGDAGLVTAAEEQASYVKDWLNKWHGRVAVVVRPADTAQTAEVVRLCHQT 65 + ++ LR+++ + ++ E+ Y D L + VVV P Q +++C+ Sbjct: 15 RTVVDALRAVLPERCVLFNEEDTRPYECDGLAAYAQLPMVVVLPDTEEQVIAALKVCNAL 74 Query: 66 HTPIVTQGGNTGMSGGATPDDSGAQVIVSTTRMNRIRAVDPINNTMTVDAGVLLAHAQEA 125 PIV +G TG+SGGA P G +++ST R+N+I VD T V GV EA Sbjct: 75 KVPIVPRGAGTGLSGGALPIADG--IVLSTARLNKIVKVDAYARTAVVQPGVRNLAISEA 132 Query: 126 ARAAGRYFPLSLGAEGSCTVGGNLATNAGGIAVLRFGNMRELALGLEVVLPDGRVWNGLR 185 G Y+ ++ +CT+GGN+A N+GG+ L++G + + VV +G V L Sbjct: 133 VAPLGLYYAPDPSSQIACTIGGNVAENSGGVHCLKYGLTVHNVMRVRVVTIEGDVIE-LG 191 Query: 186 GLRKDNTGYDLRDLFIGSEGTLGVITGAVLKLFSQPHARATAWVGSDSLAQLAELLARTR 245 D G DL +FIGSEG LG++T +KL +P D + + +A Sbjct: 192 NAALDAPGLDLLSVFIGSEGMLGMVTEVTVKLIPKPKLARVILASFDDVVKGGNAVASVI 251 Query: 246 ARCGDRLVAFEMMSAASLALVLQHVT---DTRAPLAQPAHYNALIELADTEDVGLQAMLE 302 A G EMM S +V V D A + + E D E A + Sbjct: 252 A-AGIIPAGLEMMDKTSSRMVEPFVKAGYDIDAEAILLCESDGIPEEVDEE----IARMT 306 Query: 303 ELLGQAMEDGLVGDAMLCTSGTQAAALWKIREGISQAQVRAGKVIKH----DIALPISAI 358 E+L + G + S +A L + G A AG++ D +P ++ Sbjct: 307 EVLKHS------GATAIAVSQNEAERL-RFWSGRKNAFPAAGRISPDYYCIDGTIPRRSL 359 Query: 359 AGFVDEAEALIAGCGLQAEIINFGHLGDGNLHFNVMIPLSSSYE-EVKQATLQLNRLVHD 417 A + + GL+ N H GDGNLH +I ++ E E +A L + + Sbjct: 360 ADVLLGIAQMEVKYGLRCA--NVFHAGDGNLH--PLILFDANQEGEFHRAEL-FGAEILE 414 Query: 418 LVTEQQGSISAEHGVGQLRRDELQHYKSPLEMELMLRIKQAFDPNLIMNPGK 469 + G+I+ EHGVG + +++ S E++ L +K+AFDP ++NP K Sbjct: 415 MCVAVGGTITGEHGVGLEKINQMCVQFSRAEIDAFLAVKRAFDPVSLLNPTK 466 >gi|152981534|ref|YP_001352125.1| glycolate oxidase subunit [Janthinobacterium sp. Marseille] Length = 1000 Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 111/491 (22%), Positives = 180/491 (36%), Gaps = 81/491 (16%) Query: 46 VVRPADTAQTAEVVRLCHQTHTPIVTQGGNTGMSGGATPDDSGAQVIVSTTRMNRIRAVD 105 VV P D + + TPI+ +GG T G + A VI ++ +N + D Sbjct: 55 VVVPRDQDDLLLCLDIARSEKTPILARGGGTSQCGQTVGE---ALVIDNSKWLNNVVDFD 111 Query: 106 PINNTMTVDAGVLLAHAQEAARAAGRYFPLSLGAEGSCTVGGNLATNAGGIAVLRFGNMR 165 PI T+TV+ G++L H + G +FP+ + CT+GG N+ G + +GNM Sbjct: 112 PIERTITVEPGIVLDHLNAWLKPHGLWFPVDVSTAAQCTIGGMAGNNSCGSRSIEYGNMV 171 Query: 166 ELALGLEVVLPDG---------------RVWNGLRGLRKDNT------------------ 192 L ++ VL DG R+ +GLR+ T Sbjct: 172 HNVLAIDAVLADGTQARFETLEKMAANARLQEITQGLRRIATREQDEIIERVPKVLRRVG 231 Query: 193 GYDLRDLF--------------------IGSEGTLGVITGAVLKLFSQPHAR-------A 225 GY++ DLF +GSEGTL LKL P + Sbjct: 232 GYNI-DLFDCQNPRAYTDDGSANLAHILVGSEGTLAFSRQLKLKLSPLPKHKVLGVINFP 290 Query: 226 TAWVGSDSLAQLAELLARTRARCGDRLVAFEMMSAASLALVLQHVTDTRAPLAQPAHYNA 285 T + DS + +LL ++ + + A ++ + + T + Sbjct: 291 TFYQAMDSAQHIVKLLPTAVELVDSTMIKLSLNNPAFRPVIEKALVGTPEAI-------L 343 Query: 286 LIELADTEDVGLQAMLEELLGQAMEDGLVGDAMLCTSGTQAAALWKIREG---ISQAQVR 342 L+E + + L L L + L G + + +LW +R+ I + Sbjct: 344 LVEFSGDDKAALVERLSALSDLMSDLSLPGSVVDMVDAGEQKSLWDVRKAGLNIMMSMKG 403 Query: 343 AGKVIK--HDIALPISAIAGFVDEAEALIAGCGLQAEIINFGHLGDGNLHFNVMIPLSSS 400 GK + D A+P+ +A + + E + H G LH P+ Sbjct: 404 DGKPVSFIEDCAVPLVHLAEYTSRLTEVFH--KYHTEGTWYAHASVGTLHVR---PILDM 458 Query: 401 YEEVKQATLQLNRLVHDLVTEQQGSISAEHGVGQLRRDELQHYKSPLEMELMLRIKQAFD 460 Q+ LV E +G+ S EHG G R + + P + IK FD Sbjct: 459 RRNGAADMRQIAEEASALVREYKGAYSGEHGDGLCRGEWVSWQYGPKINQAFSEIKDLFD 518 Query: 461 PNLIMNPGKLL 471 P+ NP K++ Sbjct: 519 PDNRFNPDKIV 529 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,094,817 Number of extensions: 45920 Number of successful extensions: 163 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 4 Length of query: 471 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 384 Effective length of database: 899,382 Effective search space: 345362688 Effective search space used: 345362688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)