BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1273.p (591 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979891|ref|YP_001352366.1| dihydrolipoamide dehydrogenase ... 969 0.0 gi|152980382|ref|YP_001353204.1| dihydrolipoamide dehydrogenase ... 292 3e-80 gi|152981182|ref|YP_001353439.1| putative mercuric reductase [Ja... 181 8e-47 gi|152980459|ref|YP_001352656.1| glutathione reductase [Janthino... 177 2e-45 gi|152983056|ref|YP_001352644.1| mercuric reductase [Janthinobac... 170 2e-43 >gi|152979891|ref|YP_001352366.1| dihydrolipoamide dehydrogenase [Janthinobacterium sp. Marseille] Length = 603 Score = 969 bits (2506), Expect = 0.0, Method: Compositional matrix adjust. Identities = 507/603 (84%), Positives = 546/603 (90%), Gaps = 14/603 (2%) Query: 3 LSEVKVPDIGDFKEVEVIEVMVKVGDTIKVDQSLITVESDKASMEIPSSQAGVVKEVKVK 62 + EVKVPDIGDFKEVE+IE++VKVGDTIK+DQSLITVESDKASMEIPSS AGV+KE+K+K Sbjct: 1 MIEVKVPDIGDFKEVEIIELLVKVGDTIKIDQSLITVESDKASMEIPSSHAGVIKELKIK 60 Query: 63 VGDKVAEGSLLLLVEAA--------------GEAAAAPAPAAAPAPAAAAPAPAAAPAAA 108 +GDKVAEGSLLL++EAA A AA AA AAAPA A A A Sbjct: 61 LGDKVAEGSLLLVLEAAESAPAPAATPVPAAAPAPAAAPAAAPAPVQAAAPAAAPAATPA 120 Query: 109 PTAASFGGSADVQCDVMVLGGGPGGYSAAFRAADLGLNTVIVERESTLGGVCLNVGCIPS 168 P AASFGGSAD++CD+MVLG GPGGYSAAFRAADLG++TV++ER STLGGVCLNVGCIPS Sbjct: 121 PAAASFGGSADIECDMMVLGAGPGGYSAAFRAADLGMSTVLIERYSTLGGVCLNVGCIPS 180 Query: 169 KALLHVAAVIDETAAMASHGVTFGKPEIDIDKLRAYKDKVIGTMTGGLAGMAKARKVQVV 228 KALLHVAAVIDETA+MA+HGVTFGKP+IDIDKLR YK++VIG MT GLAGMAKARKV VV Sbjct: 181 KALLHVAAVIDETASMAAHGVTFGKPQIDIDKLRGYKEQVIGKMTTGLAGMAKARKVNVV 240 Query: 229 NGDGQFAGPNHIEVTAADGSKKVVQFKHAIIAAGSSVVNLPFVPQDPRIVDSTGALELRQ 288 G GQF GPNHIEVTAADGSKK +QFK AIIAAGSSVVNLPFVPQDPRIVDSTGALELR Sbjct: 241 QGVGQFVGPNHIEVTAADGSKKTIQFKQAIIAAGSSVVNLPFVPQDPRIVDSTGALELRS 300 Query: 289 VPKRMLVIGGGIIGLEMATVYSTLGARIDVVEMMDGLMQGADRDMVKVWQKFNEKRFDNV 348 VPKRMLVIGGGIIGLEMATVYSTLGARIDVVEMMDGLMQGADRDMVKVWQKFNEKRFD + Sbjct: 301 VPKRMLVIGGGIIGLEMATVYSTLGARIDVVEMMDGLMQGADRDMVKVWQKFNEKRFDKI 360 Query: 349 MVKTKTVAVEALPEGIKVTFEAAEAGATAPEPQLYDLVLVAVGRSPNGKKLSADKAGVIV 408 M+KTKTVAVEAL EGIKV+FEAAEAGATAPEPQ+YD+VLVAVGRSPNGKK++ADKAGV V Sbjct: 361 MLKTKTVAVEALKEGIKVSFEAAEAGATAPEPQVYDMVLVAVGRSPNGKKIAADKAGVAV 420 Query: 409 SDRGFIAVDKQMRTNVPHIFAIGDLVGQPMLAHKAVHEGHVAAEAIAGEKSFFDASVIPS 468 +DRGFI VD QMRTNVPHIFAIGDLVGQPMLAHKAVHE HVAAEA AGEK++FDA VIPS Sbjct: 421 TDRGFIEVDAQMRTNVPHIFAIGDLVGQPMLAHKAVHEAHVAAEAAAGEKAYFDARVIPS 480 Query: 469 VAYTDPEVAWVGVTEDEAKAKGIKIEKGHFPWAASGRAVANGRSEGFTKLLFDAETHRII 528 VAYTDPEVAWVG+TEDEAKAKGIK+EKGHFPWAASGRAVANGR EGFTKLLFDAETHRI+ Sbjct: 481 VAYTDPEVAWVGITEDEAKAKGIKLEKGHFPWAASGRAVANGRDEGFTKLLFDAETHRIV 540 Query: 529 GGGIVGTHAGDMIGEVALAIEMGADAVDIGKTIHPHPTLGESLGMAAEVAEGHCTDLPPQ 588 GGGIVGTHAGDMIGE+ALAIEMGADAVDIGKTIHPHPTLGES+GMAAEV EG CTDLPP Sbjct: 541 GGGIVGTHAGDMIGEIALAIEMGADAVDIGKTIHPHPTLGESIGMAAEVFEGVCTDLPPA 600 Query: 589 RKK 591 RKK Sbjct: 601 RKK 603 >gi|152980382|ref|YP_001353204.1| dihydrolipoamide dehydrogenase [Janthinobacterium sp. Marseille] Length = 475 Score = 292 bits (748), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 175/473 (36%), Positives = 266/473 (56%), Gaps = 13/473 (2%) Query: 123 DVMVLGGGPGGYSAAFRAADLGLNTVIVERESTL------GGVCLNVGCIPSKALLHVAA 176 DV+V+G GPGGY AA RAA LG ++ GG C NVGCIPSKA+L + Sbjct: 6 DVVVIGAGPGGYVAAIRAAQLGFTVACIDEWKNEKGGPAPGGTCTNVGCIPSKAMLQSSE 65 Query: 177 VIDETA-AMASHGVTFGKPEIDIDKLRAYKDKVIGTMTGGLAGMAKARKVQVVNGDGQF- 234 A A HG+ +++ K+ A KD V+ G+ + K KV +G G F Sbjct: 66 NYHHAGHAFAEHGIEVKGLSLNVKKMVARKDTVVKQNNDGILYLFKKNKVTFFHGRGSFV 125 Query: 235 -AGPNHIEVTAADGSKKVVQFKHAIIAAGSSVVNLPFVPQDPR-IVDSTGALELRQVPKR 292 A E+ A +++ + KH ++A GS+ LP D + I+ +TGALE+ +VPKR Sbjct: 126 KAADGGHEIKIAGATEENIFAKHVVVATGSNPRALPGAAFDEKLILSNTGALEITEVPKR 185 Query: 293 MLVIGGGIIGLEMATVYSTLGARIDVVEMMDGLMQGADRDMVKVWQKFNEKRFDNVMVKT 352 + VIG G+IGLEM +V+ LG+ + V+E + + D + K K K+ + + Sbjct: 186 LGVIGAGVIGLEMGSVWRRLGSEVTVLEALPAFLGAVDDAVAKEAFKQFTKQGLAISLGV 245 Query: 353 KTVAVEALPEGIKVTFEAAEAGATAPEPQLYDLVLVAVGRSPNGKKLSADKAGVIVSDRG 412 + A+ A + V + + A + ++D ++V++GR PN L+A+ G+ + +RG Sbjct: 246 QIGAITAGKNDVTVNYVDDKGAA---QKAVFDKLIVSIGRVPNTIGLNAEAVGLKLDERG 302 Query: 413 FIAVDKQMRTNVPHIFAIGDLVGQPMLAHKAVHEGHVAAEAIAGEKSFFDASVIPSVAYT 472 FIAVD +T++P+++A+GD+V PMLAHK+ EG AE IAG+ + + IP V YT Sbjct: 303 FIAVDADCKTSLPNVWAVGDVVRGPMLAHKSEEEGVAVAERIAGQHGHVNFNTIPWVIYT 362 Query: 473 DPEVAWVGVTEDEAKAKGIKIEKGHFPWAASGRAVANGRSEGFTKLLFDAETHRIIGGGI 532 PE+AWVG TE + KA+ I + G FP+ A+GRA A G + GF K L DA+T I+G I Sbjct: 363 SPEIAWVGKTEQQLKAEKIAYKAGSFPFLANGRARALGDTTGFVKFLADAKTDEILGVHI 422 Query: 533 VGTHAGDMIGEVALAIEMGADAVDIGKTIHPHPTLGESLGMAAEVAEGHCTDL 585 +G A ++I E +A+E A + DI + H HP+L E++ AA +G + Sbjct: 423 IGPMASELISEAVVAMEFRASSEDIARICHAHPSLSEAVKEAALAVDGRALNF 475 >gi|152981182|ref|YP_001353439.1| putative mercuric reductase [Janthinobacterium sp. Marseille] Length = 561 Score = 181 bits (460), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 152/481 (31%), Positives = 239/481 (49%), Gaps = 62/481 (12%) Query: 124 VMVLGGGPGGYSAAFRAADLGLNTVIVERESTLGGVCLNVGCIPSKALL---HVAAVIDE 180 V+V+G G +AA +A + G + ++ER T+GG C+NVGC+PSK ++ H+A + E Sbjct: 101 VVVIGSGGAAMAAALKAVEQGAHVSLIER-GTIGGTCVNVGCVPSKIMIRAAHIAHLRRE 159 Query: 181 TAAMASHGVTFGKPEIDIDKLRAYKD---------KVIGTMTGGLAGMAKARKVQVVNGD 231 + G+ P ID KL A + K G + G A + VV+G+ Sbjct: 160 SPF--DGGIAATVPAIDRSKLLAQQQARVDELRHAKYEGILDGNPA-------ITVVHGE 210 Query: 232 GQFAGPNHIEVTAADGSKKVVQFKHAIIAAGSSVVNLPFVPQDPRIVDS-----TGALEL 286 +F + V DG ++VV F ++A G+S P VP P + +S T AL Sbjct: 211 ARFKDEQSLVVRLNDGGERVVAFDRCLVATGAS----PAVPPIPGLKESPYWTSTEALVS 266 Query: 287 RQVPKRMLVIGGGIIGLEMATVYSTLGARIDVVEMMDGLMQGADRDMVKVWQKFNEKRFD 346 +P+R+ VIG ++ LE+A ++ LG+++ ++ R+ + R D Sbjct: 267 DTLPERLAVIGSSVVALELAQAFARLGSQVTILA----------RNTLFF-------RDD 309 Query: 347 NVMVKTKTVAVEALPEGIKVTFEAAEAGATAPEPQLY-----------DLVLVAVGRSPN 395 + + T A A EGIKV E +A A + D +LVA GR+PN Sbjct: 310 PSIGEAVTAAFRA--EGIKV-LEHTQASQVAHVNGEFVLTTGHGEVRADKLLVATGRTPN 366 Query: 396 GKKLSADKAGVIVSDRGFIAVDKQMRTNVPHIFAIGDLVGQPMLAHKAVHEGHVAAEAIA 455 + L+ D AGV V+ +G I +DK MRT+ PHI+A GD QP + A G AA + Sbjct: 367 TRSLALDAAGVTVNAQGAIVIDKGMRTSTPHIYAAGDCTDQPQFVYVAAAAGTRAAINMT 426 Query: 456 GEKSFFDASVIPSVAYTDPEVAWVGVTEDEAKAKGIKIEKGHFPWAASGRAVANGRSEGF 515 G + + + +P+V +TDP+VA VG +E EA GI+ + RA+AN + GF Sbjct: 427 GGDAAINLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGF 486 Query: 516 TKLLFDAETHRIIGGGIVGTHAGDMIGEVALAIEMGADAVDIGKTIHPHPTLGESLGMAA 575 KL+ + + R+IG +V AG++I LAI ++ + P+ T+ E L +AA Sbjct: 487 IKLVIEEGSGRLIGVQVVAPEAGELIQTAVLAIRNRMTVQELADQLFPYLTMVEGLKLAA 546 Query: 576 E 576 + Sbjct: 547 Q 547 >gi|152980459|ref|YP_001352656.1| glutathione reductase [Janthinobacterium sp. Marseille] Length = 462 Score = 177 bits (448), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 131/457 (28%), Positives = 220/457 (48%), Gaps = 25/457 (5%) Query: 123 DVMVLGGGPGGYSAAFRAADLGLNTVIVERESTLGGVCLNVGCIPSKALLHVAAVIDETA 182 D+ V+GGG GG A+ AA LG I E E GG C+ GC+P K ++ + + Sbjct: 7 DLFVIGGGSGGVRASRLAASLGKRVAIAE-EYRFGGTCVIRGCVPKKLFVYASQFHEHFE 65 Query: 183 AMASHGVTFGKPEIDIDKLRAYKDKVIGTMTGGLAGMAKARKVQVVNGDGQFAGPNHIEV 242 +G GK + KL A KDK I + G + V++V + + I + Sbjct: 66 DAVGYGWEVGKNTFNWKKLTAAKDKEIARLEGLYRQGLENNGVEIVESRAELIDAHTIRL 125 Query: 243 TAADGSKKVVQFKHAIIAAGSSVVNLPFVPQDPRIVDSTGALELRQVPKRMLVIGGGIIG 302 T + + V + +IA G + +P + S A +L ++P+ +L+ GGG I Sbjct: 126 TK---TGRTVTAEKIVIATGGTPNPHAALPGHELCISSNEAFDLPELPRSILIAGGGYIA 182 Query: 303 LEMATVYSTLGARIDVVEMMDGLMQGADRDMVKVWQKFNEKRFDNVMVKTKTVAVEALPE 362 +E A ++ LGA + ++ ++ D+DM K ++ +M L + Sbjct: 183 VEFANIFHGLGAHVTLIYRGKEILSRFDQDMRHGLHKAMTEKGIRIM----------LTD 232 Query: 363 GIKVTFEAAEAGATAP----EPQLYDLVLVAVGRSPNGKKLSADKAGVIVSDRGFIAVDK 418 I+ + AE G A E + D V++A+GR PN + L + AGV +++RG I VDK Sbjct: 233 VIENISKTAEGGLMAKTKNGESMVVDSVMLALGRDPNTQGLGLEAAGVEINERGAIIVDK 292 Query: 419 QMRTNVPHIFAIGDLVGQPMLAHKAVHEGHVAAEA-IAGEKSFFDASVIPSVAYTDPEVA 477 RTNVP+I+A+GD+ + L A+HE E + D VI + ++ PE+ Sbjct: 293 YSRTNVPNIYALGDVTDRVQLTPVAIHEAMCFIETEYKNNPTAPDHDVIATAVFSQPEIG 352 Query: 478 WVGVTEDEA--KAKGIKIEKGHFPWAASGRAVANGRSE-GFTKLLFDAETHRIIGGGIVG 534 VG++E++A + + I + F + +GR E KL+ DA + +++G I+G Sbjct: 353 TVGLSEEDAVKRHSELDIYRAEF---RPMKTTISGRVEKTIMKLIVDAVSRKVLGAHILG 409 Query: 535 THAGDMIGEVALAIEMGADAVDIGKTIHPHPTLGESL 571 AG+M+ + +A++ G D +T+ HPT E Sbjct: 410 HDAGEMVQLLGVALKAGVTKEDFDRTMAVHPTAAEEF 446 >gi|152983056|ref|YP_001352644.1| mercuric reductase [Janthinobacterium sp. Marseille] Length = 474 Score = 170 bits (431), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 128/464 (27%), Positives = 213/464 (45%), Gaps = 12/464 (2%) Query: 109 PTAASFGGSADVQCDVMVLGGGPGGYSAAFRAADLGLNTVIVERESTLGGVCLNVGCIPS 168 PT+A+ G D +++G G + A R G+ ++ER S++GG C+N GC P+ Sbjct: 7 PTSATTSGKQTEIFDAIIIGTGQAAPALANRLTASGMRIAVIER-SSVGGTCVNTGCTPT 65 Query: 169 KALLHVAAVIDETAAMASHGVTFGKP-EIDIDKLRAYKDKVIGTMTGGLAG-MAKARKVQ 226 K ++ A V A A +GV P ID+ ++A DK++ T GL M Sbjct: 66 KTMVASAYVARMAARAAEYGVVLHHPPAIDMKAIKARVDKIVQTDRVGLENWMTGMPGCT 125 Query: 227 VVNGDGQFAGPNHIEVTAADGSKKVVQFKHAIIAAGSSVVNLPFVPQDPRIVDSTGALEL 286 ++ G +F N EV D +++ K I G + + ++ + +T + L Sbjct: 126 LIRGHARFESGN--EVCVDD--RRIKANKIFINVGGRAFIPDAVGLENISYLTNTDMVAL 181 Query: 287 RQVPKRMLVIGGGIIGLEMATVYSTLGARIDVVEMMDGLMQGADRDMVKVWQKFNEKRFD 346 VP ++++GG IGLE A ++ G+ + V+E L+ D ++ + Sbjct: 182 DIVPSHLIIVGGSYIGLEFAQMFRRFGSSVTVIERGSRLIAREDEEVSAQIKDILSNEDI 241 Query: 347 NVMVKTKTVAVEALPEGIKVTFEAAEAGATAPEPQLYDLVLVAVGRSPNGKKLSADKAGV 406 ++M+ + + + G+ V + L L+AVGR PN L DKAG+ Sbjct: 242 SIMLDAEELQFQKHAAGVAVNVKCKNDWKKISGSHL----LIAVGRRPNTDDLGLDKAGI 297 Query: 407 IVSDRGFIAVDKQMRTNVPHIFAIGDLVGQPMLAHKAVHEGH-VAAEAIAGEKSFFDASV 465 G+I VD+Q+RT ++A+GD G+ H A ++ VAA + GE + Sbjct: 298 ETDTMGYITVDEQLRTTANGVWALGDCNGRGAFTHTAYNDFEIVAANLLDGETRCVSDRI 357 Query: 466 IPSVAYTDPEVAWVGVTEDEAKAKGIKIEKGHFPWAASGRAVANGRSEGFTKLLFDAETH 525 Y DP + VG+T +AK G KI G RA+ G ++G +++ DAET+ Sbjct: 358 PAYALYIDPPLGRVGMTATQAKKAGRKIRVGTRQMTRVARAIEKGETQGSMRVVVDAETN 417 Query: 526 RIIGGGIVGTHAGDMIGEVALAIEMGADAVDIGKTIHPHPTLGE 569 I+G I+G + I + + A + T+ HPTL E Sbjct: 418 EILGAAILGPGGDEAIHAILATMAAKAPYTQLTHTMAIHPTLSE 461 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.133 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,241,228 Number of extensions: 52477 Number of successful extensions: 265 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 241 Number of HSP's successfully gapped: 10 Length of query: 591 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 502 Effective length of database: 891,988 Effective search space: 447777976 Effective search space used: 447777976 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)