BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1272.p (551 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980112|ref|YP_001352364.1| pyruvate dehydrogenase E2 compo... 502 e-143 gi|152980205|ref|YP_001353203.1| 2-oxoglutarate dehydrogenase E2... 150 2e-37 gi|152979891|ref|YP_001352366.1| dihydrolipoamide dehydrogenase ... 130 2e-31 >gi|152980112|ref|YP_001352364.1| pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [Janthinobacterium sp. Marseille] Length = 458 Score = 502 bits (1292), Expect = e-143, Method: Compositional matrix adjust. Identities = 242/311 (77%), Positives = 270/311 (86%), Gaps = 3/311 (0%) Query: 242 KAHASPSVRKFARELGVDLSRVPATGPKGRILQLDVQNFVKGVMAGSTSVAASAPAT-NG 300 KAHASPS+RKFARELGVDL +V +GPKGRI Q DVQN+VKG++A A +A +G Sbjct: 150 KAHASPSIRKFARELGVDLGKVAGSGPKGRITQEDVQNYVKGIIAAGPVAATAAAPVKSG 209 Query: 301 SGAGMNLLPWPSLDFSKFGETELQALSRIKKISGPNLHRNWVMIPHVTQFDEADVTELEE 360 GAG++LLPWPSLDFSKFG T LQ LSRIKKISGPNLHRNWVMIPHVTQ+DEADVTELEE Sbjct: 210 GGAGLDLLPWPSLDFSKFGTTTLQPLSRIKKISGPNLHRNWVMIPHVTQYDEADVTELEE 269 Query: 361 FRKTSNDAFAKAKSPVKLTMLAFVIKASVSALKKFPAFNSSLDAKGENLILKKFYNIGFA 420 RK++N A AK S VKLTMLAFVIKA V+ALKK+P FNSSLDA GENLILK++YNIGFA Sbjct: 270 LRKSTNTALAK--SGVKLTMLAFVIKACVAALKKYPEFNSSLDANGENLILKQYYNIGFA 327 Query: 421 ADTPNGLVVPVIKNADQKSIGQIAIEMGELSAQARDGKLKPADMQGATFTISSLGGIGGT 480 ADTP GLVVPV+K DQK++ QIA EMG+LSAQAR+GKLKPADMQGATFTISSLGGIGGT Sbjct: 328 ADTPQGLVVPVVKGVDQKTVTQIAQEMGDLSAQAREGKLKPADMQGATFTISSLGGIGGT 387 Query: 481 AFTPIINAPEVAILGLSKSITKPVWDGKQFVPRLMLPTSLSYDHRVIDGAMGARFSAYLA 540 FTP+INAPEVAI+GLSK+ KPVWDGKQFVPRL++P SLSYDHRVIDGA GARF YL+ Sbjct: 388 YFTPLINAPEVAIIGLSKTSMKPVWDGKQFVPRLIMPLSLSYDHRVIDGAQGARFVTYLS 447 Query: 541 EVLGDLRKSLL 551 EVL DLRKSLL Sbjct: 448 EVLSDLRKSLL 458 Score = 132 bits (332), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 65/77 (84%), Positives = 74/77 (96%) Query: 1 MSQVEVKVPDIGDFKEVEVIEVMVKVGDTIKVDQSLITVESDKASMEIPSSQAGVVKEIK 60 MS VEVKVPDIGDFKEVEVIE++VK GDTIKVDQSLITVESDKASMEIPSS AGVVKEIK Sbjct: 1 MSMVEVKVPDIGDFKEVEVIELLVKAGDTIKVDQSLITVESDKASMEIPSSHAGVVKEIK 60 Query: 61 VKVGDKVAEGSLLVIVE 77 VK+GDK+AEG+L++++E Sbjct: 61 VKLGDKIAEGALVLLLE 77 >gi|152980205|ref|YP_001353203.1| 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [Janthinobacterium sp. Marseille] Length = 423 Score = 150 bits (378), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 76/183 (41%), Positives = 117/183 (63%), Gaps = 3/183 (1%) Query: 347 VTQFDEADVTELEEFRKTSNDAFAKAKSPVKLTMLAFVIKASVSALKKFPAFNSSLDAKG 406 +T F+E ++ + + R D F K VKL ++F +KA+V+ALKK+P N+S+D G Sbjct: 220 LTTFNEVNMQPVIDLRTKYKDKFEKEHG-VKLGFMSFFVKAAVAALKKYPIINASVD--G 276 Query: 407 ENLILKKFYNIGFAADTPNGLVVPVIKNADQKSIGQIAIEMGELSAQARDGKLKPADMQG 466 +++ +++IG A +P GLVVP++++ADQ SI +I ++GE +A+DGKL D+ G Sbjct: 277 NDIVYHGYFDIGIAVGSPRGLVVPILRDADQMSIAEIEKKIGEFGNKAKDGKLTLDDLTG 336 Query: 467 ATFTISSLGGIGGTAFTPIINAPEVAILGLSKSITKPVWDGKQFVPRLMLPTSLSYDHRV 526 TF+IS+ G G TPIIN P+ AILG+ + + V + Q V R M ++SYDHR+ Sbjct: 337 GTFSISNGGIFGSMLSTPIINPPQSAILGIHATKERAVVENGQIVIRPMNYLAMSYDHRI 396 Query: 527 IDG 529 IDG Sbjct: 397 IDG 399 >gi|152979891|ref|YP_001352366.1| dihydrolipoamide dehydrogenase [Janthinobacterium sp. Marseille] Length = 603 Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 61/74 (82%), Positives = 73/74 (98%) Query: 4 VEVKVPDIGDFKEVEVIEVMVKVGDTIKVDQSLITVESDKASMEIPSSQAGVVKEIKVKV 63 +EVKVPDIGDFKEVE+IE++VKVGDTIK+DQSLITVESDKASMEIPSS AGV+KE+K+K+ Sbjct: 2 IEVKVPDIGDFKEVEIIELLVKVGDTIKIDQSLITVESDKASMEIPSSHAGVIKELKIKL 61 Query: 64 GDKVAEGSLLVIVE 77 GDKVAEGSLL+++E Sbjct: 62 GDKVAEGSLLLVLE 75 Score = 125 bits (314), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 58/76 (76%), Positives = 73/76 (96%) Query: 120 VEIEVPDIGDFKEVEVIEVMVKVGDTVKAEQSLLTVESDKASMEIPSSHAGVIKELKVKL 179 +E++VPDIGDFKEVE+IE++VKVGDT+K +QSL+TVESDKASMEIPSSHAGVIKELK+KL Sbjct: 2 IEVKVPDIGDFKEVEIIELLVKVGDTIKIDQSLITVESDKASMEIPSSHAGVIKELKIKL 61 Query: 180 GDKVSKGSIIATIEAA 195 GDKV++GS++ +EAA Sbjct: 62 GDKVAEGSLLLVLEAA 77 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.312 0.128 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 964,698 Number of extensions: 36573 Number of successful extensions: 154 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 6 Length of query: 551 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 463 Effective length of database: 895,685 Effective search space: 414702155 Effective search space used: 414702155 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)