BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1264.p
         (142 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982640|ref|YP_001352358.1| hypothetical protein mma_0668 [...    53   7e-09

>gi|152982640|ref|YP_001352358.1| hypothetical protein mma_0668
           [Janthinobacterium sp. Marseille]
          Length = 129

 Score = 53.1 bits (126), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 20/138 (14%)

Query: 5   DHSIPLLTEVIPLAPAAPDYAAPAQPGAFHLQPAAASYQAPAAAAPILAAVPTPLPVTPA 64
           D  IP+LTEVIP  P      A A   A       ++   PAA  PI + +         
Sbjct: 8   DFGIPVLTEVIPTPPRV--VHAEATSTAVD-----SNASDPAAHKPIDSWLD-------- 52

Query: 65  AEQYRQWEQEIRENVLQSLLERVDTVLHQHLQDQMALALDHLSDMVMQRVKEGLRDALAE 124
            E++ + EQ+I E VL  LLER++ VL Q ++D +A  +     +  + +K+ L   LA+
Sbjct: 53  -EEWSRMEQKISERVLTQLLERIEPVLEQRIKDSLAQVM----QLAAEGIKQDLHQTLAD 107

Query: 125 TVERAVAEEMARFASSKK 142
            +  AVA+E+ +   S K
Sbjct: 108 AISDAVAQEVDKIHFSNK 125


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.127    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 181,262
Number of extensions: 4338
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 1,221,021
Length adjustment: 75
Effective length of query: 67
Effective length of database: 943,746
Effective search space: 63230982
Effective search space used: 63230982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)