BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1263.p (436 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982324|ref|YP_001352357.1| D-amino-acid dehydrogenase, sma... 766 0.0 gi|152982689|ref|YP_001352096.1| D-amino-acid dehydrogenase [Jan... 692 0.0 gi|152980179|ref|YP_001353230.1| D-amino-acid dehydrogenase [Jan... 230 1e-61 >gi|152982324|ref|YP_001352357.1| D-amino-acid dehydrogenase, small subunit [Janthinobacterium sp. Marseille] Length = 438 Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/433 (82%), Positives = 402/433 (92%), Gaps = 1/433 (0%) Query: 1 MKVIVLGAGIIGTASAWFLKKQGYDVTVIERQPGAAQETSFANGCQISVSHAEPWANPAA 60 MKVIVLG+GIIGT+SAWFL K G++VTVIERQPGAAQETSFANGCQISVSHAEPWANPAA Sbjct: 1 MKVIVLGSGIIGTSSAWFLNKLGHEVTVIERQPGAAQETSFANGCQISVSHAEPWANPAA 60 Query: 61 PMKVLKWLGKEDAPLLYRFRTEWLQWKWALAFLRECTAARTDENIRNIVALCEYSRQTLQ 120 PMKVLKWLGKEDAPLLYRFR EWLQWKWAL FLRECT ART++NIR IVA+CEYSRQTLQ Sbjct: 61 PMKVLKWLGKEDAPLLYRFRPEWLQWKWALNFLRECTPARTNDNIRQIVAICEYSRQTLQ 120 Query: 121 AVRAETGIQYDHLTRGILHFYTEEKEFQDSLPAAKLMRDLGCPRESIGADEVVRIEPALA 180 AVRAETGI YD LT GILHFYT++KEF DSLPAAKLMRDLGCPR+SI ADEVVRIEPALA Sbjct: 121 AVRAETGINYDQLTSGILHFYTDQKEFDDSLPAAKLMRDLGCPRDSISADEVVRIEPALA 180 Query: 181 SIRNKIVGGDFTATDESGDVFKLTTGLAKKSEEAGVEFRYSTTITRLITEGTGAAARVTG 240 SIRNKIVGGDFTATDESGDV+K T+GLA K+ EAGV+F+Y+T++TRL+TEG+GA A++TG Sbjct: 181 SIRNKIVGGDFTATDESGDVYKFTSGLAAKAAEAGVDFQYNTSVTRLLTEGSGANAKITG 240 Query: 241 VEIINPDGRHEVLKADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDAAPTV 300 VE+I PDGRH+VL AD +V+AMGSFS +LV+PLGIDL++YPGKGYSATY++ +P AAPTV Sbjct: 241 VEVIGPDGRHKVLHADAYVMAMGSFSAELVRPLGIDLMIYPGKGYSATYKVIDPAAAPTV 300 Query: 301 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYENPTY 360 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTR+LNT RCEAITRRTRELFPD CDY+NP Y Sbjct: 301 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRDLNTARCEAITRRTRELFPDACDYDNPVY 360 Query: 361 WTGLRPLTPSNVPYVGKTKFANLYLNTGHGTLGWTMGCGSGRAIAEIVAGHVPEIDFAFT 420 WTGLRPLTPSNVPY+GKTK++NLYLNTGHGTLGWTMGCGSGRA+AEIV+G P++DF FT Sbjct: 361 WTGLRPLTPSNVPYIGKTKYSNLYLNTGHGTLGWTMGCGSGRALAEIVSGLQPDLDFKFT 420 Query: 421 GLPRWNRARQVVT 433 G+P + +RQ+ T Sbjct: 421 GMP-YRPSRQLTT 432 >gi|152982689|ref|YP_001352096.1| D-amino-acid dehydrogenase [Janthinobacterium sp. Marseille] Length = 504 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/422 (75%), Positives = 366/422 (86%) Query: 1 MKVIVLGAGIIGTASAWFLKKQGYDVTVIERQPGAAQETSFANGCQISVSHAEPWANPAA 60 MKVIVLG+GIIGTASAWFL K G++VTV+ERQPGAAQETSFANGCQISVSHA PWAN A Sbjct: 63 MKVIVLGSGIIGTASAWFLNKAGHEVTVVERQPGAAQETSFANGCQISVSHATPWANKGA 122 Query: 61 PMKVLKWLGKEDAPLLYRFRTEWLQWKWALAFLRECTAARTDENIRNIVALCEYSRQTLQ 120 P+ +LK LGKEDAPLLYRFR EWLQWKW + FLRECT RT NI IVA+ EYSRQTLQ Sbjct: 123 PLTILKALGKEDAPLLYRFRAEWLQWKWGMNFLRECTPQRTVHNIHQIVAIAEYSRQTLQ 182 Query: 121 AVRAETGIQYDHLTRGILHFYTEEKEFQDSLPAAKLMRDLGCPRESIGADEVVRIEPALA 180 AVR E I YD LTRGILHFYT++K+F +SL +A +MR+LGCPRE + ++ V++EPALA Sbjct: 183 AVRQEVDIDYDCLTRGILHFYTQQKDFDESLASASVMRELGCPREPLTVEQAVQLEPALA 242 Query: 181 SIRNKIVGGDFTATDESGDVFKLTTGLAKKSEEAGVEFRYSTTITRLITEGTGAAARVTG 240 IR +IVG DFT TDESGD++K TTGLA+K++E GV F ++TT+TRLITEGTGAAARVTG Sbjct: 243 HIRKQIVGADFTETDESGDIYKFTTGLARKAQERGVHFEFNTTVTRLITEGTGAAARVTG 302 Query: 241 VEIINPDGRHEVLKADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDAAPTV 300 VE+INP+GRH L AD FV+AMGSFS ++KPLGI+L++YPGKGYSATY I NPD AP V Sbjct: 303 VEVINPEGRHMSLHADAFVMAMGSFSVPMLKPLGINLMIYPGKGYSATYPIVNPDLAPAV 362 Query: 301 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYENPTY 360 SL DDGYKLV+SRLGD+LRVAGTCE NGY+RELN TRCEAITRRTRELFPD CDY NP Y Sbjct: 363 SLIDDGYKLVLSRLGDKLRVAGTCEFNGYSRELNATRCEAITRRTRELFPDACDYSNPAY 422 Query: 361 WTGLRPLTPSNVPYVGKTKFANLYLNTGHGTLGWTMGCGSGRAIAEIVAGHVPEIDFAFT 420 W GLRPLTPSNVPY+GKTKF+NLYLNTGHG+LGWTMGCGSGRAIA+I++G PE++FAFT Sbjct: 423 WAGLRPLTPSNVPYIGKTKFSNLYLNTGHGSLGWTMGCGSGRAIADIISGVQPEVNFAFT 482 Query: 421 GL 422 G+ Sbjct: 483 GM 484 >gi|152980179|ref|YP_001353230.1| D-amino-acid dehydrogenase [Janthinobacterium sp. Marseille] Length = 414 Score = 230 bits (586), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 128/421 (30%), Positives = 214/421 (50%), Gaps = 20/421 (4%) Query: 1 MKVIVLGAGIIGTASAWFLKKQGYDVTVIERQPGAAQETSFANGCQISVSHAEPWANPAA 60 M+V V+GAG+IG ++A+FL + G++V VIER A+E S+ + ++ S PWA P Sbjct: 1 MQVAVIGAGVIGVSTAYFLAEAGHEVVVIERHNNVAEEASYGDSGILAASSIAPWAAPGV 60 Query: 61 PMKVLKWLGKEDAPLLYR--FRTEWLQW--KWALAFLRECTAARTDENIRNIVALCEYSR 116 P L +L K +AP+L +R L W +W ++E R N + + YSR Sbjct: 61 PRSFLSYLLKSEAPVLLNQPWRPSMLGWMRRW----MKEADIERYRINRERMQRIGFYSR 116 Query: 117 QTLQAVRAETGIQYDHLTRGILHFYTEEKEFQDSLPAAKLMRDLGCPRESIGADEVVRIE 176 +Q +R + Y+ T G L + E++ Q + + + + P + + A + ++ Sbjct: 117 DIMQMLRERHQLDYEQ-TPGYLQLFRTERDLQLAKTSFDYLSEHNIPHKLLDAGQAHAVD 175 Query: 177 PALASIRNKIVGGDFTATDESGDVFKLTTGLAKKSEEAGVEFRYSTTITRLITEGTGAAA 236 AL + + G + DE+G+ T + +++ GVEF + + + + G Sbjct: 176 SAL-NPNTPLAGALYLPEDEAGNCPLFTRQIRAQAQAMGVEFLFGSKVKSIEESKRGVHL 234 Query: 237 RVTGVEIINPDGRHEVLKADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDA 296 ++ A+ VVA G+ S +L+ PLG+ L L K Y AT I N ++ Sbjct: 235 QID----------DHSFSAECVVVAGGADSAKLLTPLGLHLPLRAVKSYCATATIRNFES 284 Query: 297 APTVSLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYE 356 AP ++ D+ YK+ ++R+G R+RVAGT EL EL T + + + FPD C+Y Sbjct: 285 APVAAVVDEAYKIAITRMGKRIRVAGTAELGSNNAELRQTALNTLLKVGYDWFPDACNYN 344 Query: 357 NPTYWTGLRPLTPSNVPYVGKTKFANLYLNTGHGTLGWTMGCGSGRAIAEIVAGHVPEID 416 +W+G P P +G + N+YLN GHG+ GW M GSG+ +A++++G P+ID Sbjct: 345 TAAFWSGSSLALPDGAPLLGACRVRNVYLNIGHGSTGWAMAAGSGKVLADVISGRTPDID 404 Query: 417 F 417 Sbjct: 405 L 405 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.135 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,071,399 Number of extensions: 46097 Number of successful extensions: 133 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 3 Length of query: 436 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 350 Effective length of database: 903,079 Effective search space: 316077650 Effective search space used: 316077650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)