BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1261.p (348 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982630|ref|YP_001355220.1| hypothetical protein mma_3530 [... 402 e-113 gi|152982523|ref|YP_001355121.1| diguanylate cyclase [Janthinoba... 114 6e-27 gi|152982708|ref|YP_001353141.1| hypothetical protein mma_1451 [... 96 3e-21 gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [... 95 5e-21 gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinoba... 91 1e-19 >gi|152982630|ref|YP_001355220.1| hypothetical protein mma_3530 [Janthinobacterium sp. Marseille] Length = 356 Score = 402 bits (1034), Expect = e-113, Method: Compositional matrix adjust. Identities = 191/353 (54%), Positives = 261/353 (73%), Gaps = 9/353 (2%) Query: 1 MKQPLLKHLVEITAHREHSRLAISVISALYQLTEVQSIRMLDIFTLRDEYFVQEKMVIRD 60 M LL HLVEIT HR+H L ISV++AL + V R++++F R E FV+ ++ I Sbjct: 1 MMGSLLDHLVEITGHRDHDLLDISVMTALLNMVGVAEARVMELFQSRGELFVRPRVWISG 60 Query: 61 GTVHTIAE--LTSDDPKEPLAAYPAMLACIRNHLNEYQETTDSGEHLLWLPVWLHGKMNS 118 G V T+ E +S+ EP+ ++P ++ACI N +E+T++G H+LW+P+W + K+++ Sbjct: 61 GAVQTVDEEYTSSEQAGEPIVSFPGLVACIAQRKNRLEESTENGRHVLWIPIWQNDKVST 120 Query: 119 CLEIRSQSAFTPAMMDVIHGIFHVYCNYQSLLDYSERDALTGLFNRKTFDEQFTRYAFAI 178 CLEI FTP M+ V+ GI VY NYQSLLDYSERD+LTGL NRKTFDE+F R A Sbjct: 121 CLEIAHTQPFTPQMLQVMEGILSVYRNYQSLLDYSERDSLTGLLNRKTFDEKFARMVNA- 179 Query: 179 APHEAHSLEEN---ERRHEDHGEPKGHWLGVVDIDHFKQVNDRYGHLYGDEVLILVANIL 235 P E+ + ++ ERRH H + K WL V+DIDHFK+VND++GHLYGDEVLILVAN+L Sbjct: 180 KPSESVARDDEGREERRH--HADVKSQWLAVIDIDHFKRVNDQFGHLYGDEVLILVANVL 237 Query: 236 RASFRAHDRIFRFGGEEFVILLRSTTLSDARKIFDRFRQNVQEYDFPQVGKVTVSLGFVG 295 R SFRA DR+FRFGGEEFV+LLRS TL+DA+ +F+RFR +++++ FPQ+G++TVS+GF Sbjct: 238 RTSFRAQDRVFRFGGEEFVVLLRSATLADAQMVFERFRTSIEQHSFPQIGQITVSIGFAS 297 Query: 296 IARETPVVILGHADQALYHAKKSGRNRICYYQELVNAGVLRSGITTNDTVEFF 348 I++ETPVVILGHADQALY+AK GRN++CYY EL++ G+L+ G ++VEFF Sbjct: 298 ISQETPVVILGHADQALYYAKDHGRNQVCYYDELLDQGLLQVG-KKAESVEFF 349 >gi|152982523|ref|YP_001355121.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 408 Score = 114 bits (286), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 71/195 (36%), Positives = 108/195 (55%), Gaps = 20/195 (10%) Query: 132 MMDVIHGIFHVYCNYQSLLDYSERDALTGLFNRKTFDEQFTRYAFAIAPHEAHSLEENER 191 M + + +F + + + + RD L G FNR RY A +LE+ +R Sbjct: 219 MQQLHNALFKATRKIKDIEEDARRDVLLGCFNR--------RYIVA-------ALEQQKR 263 Query: 192 RHEDHGEPKGHWLGVVDIDHFKQVNDRYGHLYGDEVLILVANILRASFRAHDRIFRFGGE 251 ++ G P L V+D+DHFK+VND GHL GDEVL A + ++ R HD R+GGE Sbjct: 264 MADESGAPL--CLAVIDLDHFKRVNDEAGHLGGDEVLRTFARVAESNVRKHDIFGRYGGE 321 Query: 252 EFVILLRSTTLSDARKIFDRFRQNVQEYDFPQV--GKVTVSLGFVG-IARETPVVILGHA 308 EF+++L T LS A I +R R ++++D+ +VTVS+G IA E+ + + Sbjct: 322 EFLLVLPETPLSAALNISERIRTQIEQHDWQGKLRNRVTVSIGLTQYIAGESVLDLFSRT 381 Query: 309 DQALYHAKKSGRNRI 323 D A+Y AK+SGRN++ Sbjct: 382 DTAMYMAKQSGRNQV 396 >gi|152982708|ref|YP_001353141.1| hypothetical protein mma_1451 [Janthinobacterium sp. Marseille] Length = 528 Score = 95.9 bits (237), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 65/213 (30%), Positives = 101/213 (47%), Gaps = 24/213 (11%) Query: 122 IRSQSAFTPAMMDVIHG---IFHVYCNYQSLLDYSERDALTGLFNRKTFDEQFTRYAFAI 178 +RS+ A DV I ++ + + + D LTG NR+ D+ R A Sbjct: 333 LRSRDIVLAARKDVEDAEARIHNLELQLEQMSELVREDQLTGSLNRRGLDDVLERE-IAR 391 Query: 179 APHEAHSLEENERRHEDHGEPKGHWLGVVDIDHFKQVNDRYGHLYGDEVLILVANILRAS 238 A A L + ++D+D FK++ND+YGH+ GDE LI + +++ + Sbjct: 392 ADRRASPL----------------CIAMLDLDDFKKINDKYGHMAGDEALIHLVRVIKDT 435 Query: 239 FRAHDRIFRFGGEEFVILLRSTTLSDARKIFDRFRQNVQEYDFPQVGKVTVSLGFVGIA- 297 R D I RFGGEEF+I+L T L +A R ++ + + F + G+A Sbjct: 436 LRTMDVIARFGGEEFLIVLPDTPLEEAILTITRLQRELTKQIFMHNHTRLLMTFSAGVAL 495 Query: 298 ---RETPVVILGHADQALYHAKKSGRNRICYYQ 327 RE ++ AD ALY AKK+G+NR+ Q Sbjct: 496 RKEREDQAAMVKRADIALYEAKKAGKNRVIPAQ 528 >gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [Janthinobacterium sp. Marseille] Length = 352 Score = 95.1 bits (235), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 93/333 (27%), Positives = 141/333 (42%), Gaps = 51/333 (15%) Query: 12 ITAHREHSRLAISVISALYQLTEVQSIRMLDIFTLRDEYFVQEKMVIRDGTVHTIAELTS 71 +T E + +S+I ++ + S +DI + FV++K DG + E+ Sbjct: 46 LTEASELDVITLSLIDPAAEIRRILSDLRIDISDYPNLLFVEDK----DG----VGEIAH 97 Query: 72 DDPKEPLAAYPAMLACIRNHLNEYQETTDSGEHLLWLPVWLHGKMNSCLEIRS--QSAFT 129 K L Y M H + +T + LP+ + L + S + FT Sbjct: 98 PARKPALGPYNTM-----QHKRLFPDTVLKPASVAILPLIRRNTLIGWLSLGSLDPTRFT 152 Query: 130 PAMMD--------VIHGIFHVYCNYQSLLDYSERDALTGLFNRKTFDEQFTRYAFAIAPH 181 M ++ N + L D LTG+ NR+ + + Sbjct: 153 ANMASDFLQHRASIVAICVENVINNERLQHIGLTDPLTGVNNRRYVERRL---------- 202 Query: 182 EAHSLEENERRHEDHGEPKGHWLGVVDIDHFKQVNDRYGHLYGDEVLILVANILRASFRA 241 LEE R G + +D+DHFK+VND +GH GDEVL VAN ++A R Sbjct: 203 ----LEEVGRTQRHGYALSGMY---IDLDHFKKVNDNFGHQGGDEVLCEVANRIKAELRL 255 Query: 242 HDRIFRFGGEEFVILLRSTTLSDARKIFDRFRQNVQEYDFPQVG----KVTVSLGFVGIA 297 D + RFGGEEFV+LL L A + +R R +V E + TVS+G + Sbjct: 256 SDALGRFGGEEFVVLLIDAPLDAALVVAERIRASVSERPIVLSSGEELRATVSIGVASLN 315 Query: 298 ----RETPVV---ILGHADQALYHAKKSGRNRI 323 +++ V +L AD ALY AKK GRN++ Sbjct: 316 TADRQDSAAVAQQLLAKADLALYQAKKEGRNKV 348 >gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 605 Score = 90.9 bits (224), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 86/179 (48%), Gaps = 26/179 (14%) Query: 153 SERDALTGLFNRKTFDEQFTRYAFAIAPHEAHSLEENERRHEDHGEPKGHWLGVV--DID 210 S DALTG FNR+ F+E A + R H+ L V+ DID Sbjct: 445 SRVDALTGAFNRRYFNEV-----------AALEFAKVRRLHQP--------LSVISFDID 485 Query: 211 HFKQVNDRYGHLYGDEVLILVANILRASFRAHDRIFRFGGEEFVILLRSTTLSDARKIFD 270 FKQ+ND YGH GDEV+ A + R + R D + R GGEEF ILL +T+ A + Sbjct: 486 LFKQINDNYGHAAGDEVIKAAARVSRNAVREIDFVARIGGEEFAILLPGSTIEQAAATAE 545 Query: 271 RFRQNVQEYDFPQVGKVTVSLGFVGIAR-----ETPVVILGHADQALYHAKKSGRNRIC 324 R R+ V GK+ G+A+ ++ +L AD+ +Y AK GRNR+ Sbjct: 546 RLRELVIAEQVSYQGKLLAFTASFGVAQLKDSDQSFEALLQRADEMMYRAKNLGRNRVA 604 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.138 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 804,088 Number of extensions: 32264 Number of successful extensions: 155 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 118 Number of HSP's successfully gapped: 29 Length of query: 348 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 264 Effective length of database: 910,473 Effective search space: 240364872 Effective search space used: 240364872 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 130 (54.7 bits)