BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1257.p (477 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrog... 352 3e-98 gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde deh... 174 7e-45 gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogen... 135 4e-33 >gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrogenase (NADP+) [Janthinobacterium sp. Marseille] Length = 490 Score = 352 bits (902), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 189/470 (40%), Positives = 285/470 (60%), Gaps = 7/470 (1%) Query: 8 FINGEWTASASGRTIDVINPATEEVIGKIAHADRSDLDRALEAAKKGFETWRNMSAFERS 67 +ING W + + DV NPA I + + + ++A++AA F W + ER+ Sbjct: 20 YINGAWVTGKA--SFDVNNPADGSKITDVPNLGAQETEQAIQAAHAAFPAWAAKTGKERA 77 Query: 68 KIMRRAADLLRERAEDVARLMTQEQGKPLAEAKMETLGAADTIDWFAEEARRTYGRLVPA 127 IMR DL+ A+D+A LMT EQGKPL E++ E + A I+WFAEEA+R G ++ + Sbjct: 78 GIMRIWFDLIIANADDLAALMTAEQGKPLIESRGEVIYGASFIEWFAEEAKRVSGDVMAS 137 Query: 128 RVPGAYQMVIKEPVGPVAAFTPWNFPINQVVRKLSAALAAGCSIIVKAPEETPASPAELI 187 + IK+P+G A+ TPWNFPI + RK++ A+AAGC+I++K E+TP S + Sbjct: 138 TWSDKRTVTIKQPIGVCASITPWNFPIAMITRKVAPAIAAGCTIVIKPAEQTPLSALAIA 197 Query: 188 RAYADAGVPAGVINLVYGVPAE---ISEYLIPHPVIKKISFTGSTPVGKQLAALAGQYMK 244 AG+P GVIN+V + + + L P+++ +SFTGSTPVG+ L +K Sbjct: 198 ELAHRAGIPPGVINVVTSDSDQSIAVGKVLCSSPIVRHVSFTGSTPVGRILMEQCAPTVK 257 Query: 245 RATMELGGHAPAMVFDDVDVDVAAKTLAMAKFRNAGQVCVSPTRFLVQKGVFNAFVDKFV 304 + +ELGGHAP +VFDD D+D A +K+RNAGQ CV RF V + +++ FV K Sbjct: 258 KIGLELGGHAPFIVFDDADLDAAVVGALQSKYRNAGQTCVCTNRFYVHESIYDTFVQKLG 317 Query: 305 TYAEQLKVGNGLEAGVNMGPVANKRRIPALEALIDDALAQGAQLRTGGKRIGNKGYFFQP 364 A ++KVGNG+E GV GP+ + + + +E + DA+++GA++ TGGK+ GYF++P Sbjct: 318 AGAAKIKVGNGVEQGVLQGPLIDAQAVKKVEQHVSDAVSKGAKVITGGKQHALGGYFYEP 377 Query: 365 TVLTNIPLNARVMNEEPFGPLALINSFESLDDVIAEANRLPFGLAAYAFAKSAHTKHALA 424 TVL+NI + +M+EE FGP+A + F++ D+ +A AN FGLA+Y +++ +A Sbjct: 378 TVLSNISPDMLIMHEETFGPVAAVIKFKTEDEAVAAANDTDFGLASYFYSRDIGRVWRVA 437 Query: 425 ARVESGMLTINHLGLALPEL-PFGGIKDSGYGSEGGTEAIEAYINTKLVT 473 ++E GM+ IN GL E+ PFGG+K SG G EG IE Y+ K + Sbjct: 438 EKLEYGMVGIN-TGLISNEVAPFGGVKQSGLGREGSKYGIEEYLEIKYLC 486 >gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde dehydrogenase [Janthinobacterium sp. Marseille] Length = 505 Score = 174 bits (442), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 131/482 (27%), Positives = 223/482 (46%), Gaps = 13/482 (2%) Query: 5 VQLFINGEWTASASGRTIDVINPATEEVIGKIAHADRSDLDRALEAAKKGFETWRNMSAF 64 ++ +ING T +A GR DV NPAT E ++ A +D+ + AK W + + Sbjct: 7 IKHYINGRLTETAGGRQQDVFNPATGEASAQVVLASDADVQAVVATAKAAAPAWADTAPL 66 Query: 65 ERSKIMRRAADLLRERAEDVARLMTQEQGKPLAEAKMETLGAADTIDWFAEEARRTYGRL 124 +R++I+ + DL+ + +D+A +T+E GK ++AK E + +++ + + Sbjct: 67 KRARILFKFKDLIEKHHDDLAAAITREHGKVFSDAKGEVTRGLEVVEFACGVPQLLKTQF 126 Query: 125 VPARVPGAYQMVIKEPVGPVAAFTPWNFPINQVVRKLSAALAAGCSIIVKAPEETPASPA 184 G +++P+G A TP+NFP + ALA G + I+K E P+ Sbjct: 127 TDNIGGGIDNWNLRQPLGVTAGITPFNFPFMVPMWMAPVALATGNTFILKPSERDPSPSL 186 Query: 185 ELIRAYADAGVPAGVINLVYGVPAEISEYLIPHPVIKKISFTGSTPVGKQLAAL-----A 239 + AG+P GV N++ G + + L+ HP +K +SF GSTP+ + + A Sbjct: 187 MVAELLQQAGLPDGVFNVLQGDKLAV-DGLLQHPDVKAVSFVGSTPIAEYIYATGAARKG 245 Query: 240 GQYMKRATMELGGHAPAMVFDDVDVDVAAKTLAMAKFRNAGQVCVSPTRFLVQKGVFNAF 299 G Y R G +V D +++ A L A + +AG+ C++ + + + + Sbjct: 246 GSYPLRVQALGGAKNHLVVMPDANLEQAVDALIGAAYGSAGERCMAISVAVAVGDIADKL 305 Query: 300 VDKFVTYAEQLKVGNGLEAGVNMGPVANKRRIPALEALIDDALAQGAQLRTGGKRI---- 355 V + + LKV NG+EA MGPV + +E ID + GA+L G+ + Sbjct: 306 VAALIPRVKSLKVKNGMEADAEMGPVVSAAHKAKIEGYIDAGVKAGAKLLVDGRGLKVAG 365 Query: 356 GNKGYFFQPTVLTNIPLNARVMNEEPFGPLALINSFESLDDVIAEANRLPFGLAAYAFAK 415 +KG+F + ++ + EE FGP+ + + + NR FG F Sbjct: 366 HDKGFFLGGCLFDHVTPEMTIYQEEIFGPVLCVLRVPNFAAALELINRHEFGNGVSLFTS 425 Query: 416 SAHTKHALAARVESGMLTIN-HLGLALPELPFGGIKDSGYGSEG--GTEAIEAYINTKLV 472 +T + RVE GM+ IN + + + FGG K S +G G E I+ Y K + Sbjct: 426 DGNTAREFSRRVEVGMVGINVPIPVPMAWHSFGGWKRSMFGDTHAYGEEGIKFYTRYKSI 485 Query: 473 TQ 474 Q Sbjct: 486 MQ 487 >gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase [Janthinobacterium sp. Marseille] Length = 1242 Score = 135 bits (341), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 121/476 (25%), Positives = 211/476 (44%), Gaps = 40/476 (8%) Query: 3 KDVQLFINGEWTAS-----ASGRTIDVINPATE-EVIGKIAHADRSDLDRALEAAKKGFE 56 K + + +W A+ S I+V NPA +V+G + AD + L+ AL+ A G Sbjct: 576 KALNTYTRWQWRAAPSCTQVSSACIEVRNPANHADVVGTVQQADAAVLELALQHATSGIN 635 Query: 57 TWRNMSAFERSKIMRRAADLLRERAEDVARLMTQEQGKPLAEAKMETLGAADTIDWFAEE 116 TW+ ER+ I+ +AADL ++ A ++ L+ +E GK L A E A D + +++ + Sbjct: 636 TWQAKPIAERAAILLQAADLFQQHATELIALLVREAGKTLPNAIGELREAIDFLRYYSAQ 695 Query: 117 ARRTYGRLVPARVPGAYQMVIKEPVGPVAAFTPWNFPINQVVRKLSAALAAGCSIIVKAP 176 A + +P+G VA +PWNFP++ ++SAALAA ++ K Sbjct: 696 AIASDA---------------NQPLGLVACISPWNFPLSIFTGQVSAALAAANVVLAKPA 740 Query: 177 EETPASPAELIRAYADAGVPAGVINLVYGVPAEISEYLIPHPVIKKISFTGSTPVGKQLA 236 E+TP ++ AGVP + + G I L+ P + + FTGST V + Sbjct: 741 EQTPLIACRAVQLLHQAGVPENALLFLPGSGETIGAQLVTDPRVSAVVFTGSTQVAQ--- 797 Query: 237 ALAGQYMKRA---------TMELGGHAPAMVFDDVDVDVAAKTLAMAKFRNAGQVCVSPT 287 ++ + ++R+ E GG +V + + + + F +AGQ C + Sbjct: 798 SIQRKLVQRSISEGKDIPLIAETGGQNTMIVDSSALCEQVVRDVISSAFDSAGQRCSALR 857 Query: 288 RFLVQKGVFNAFVDKFVTYAEQLKVGNGLEAGVNMGPVANKRRIPALEALIDDALAQGAQ 347 +Q + + ++L++G ++GPV + L+A I A A G Q Sbjct: 858 VLCLQDDIAEQTLQMLHGAMQELRIGRPDHLATDVGPVIDAEAQAHLQAYIRQAQAAGKQ 917 Query: 348 LRTGGKRIGNKGYFFQPTVLTNIPLNARVMNEEPFGPLALINSF--ESLDDVIAEANRLP 405 +R + N G F P ++ +N + E FGP+ + + + L ++ + N Sbjct: 918 VRQLPLPVTN-GSFVAPCIIEIADINE--LQREVFGPVLHVLRYRRDDLPQLLMDINSTG 974 Query: 406 FGLAAYAFAKSAHTKHALAARVESGMLTINH--LGLALPELPFGGIKDSGYGSEGG 459 FGL + T + + G + +N +G + PFGG SG G + G Sbjct: 975 FGLTLGIHTRIDETIDYVVRHAQVGNIYVNRNIVGAVVGVQPFGGEGLSGTGPKAG 1030 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,074,161 Number of extensions: 45435 Number of successful extensions: 150 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 3 Length of query: 477 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 390 Effective length of database: 899,382 Effective search space: 350758980 Effective search space used: 350758980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)