BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1254.p
         (189 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980313|ref|YP_001351767.1| DNA-3-methyladenine glycosylase...   291   2e-80

>gi|152980313|ref|YP_001351767.1| DNA-3-methyladenine glycosylase I
           [Janthinobacterium sp. Marseille]
          Length = 190

 Score =  291 bits (744), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 132/183 (72%), Positives = 156/183 (85%)

Query: 7   RCGWVNLANPRYVDYHDHEWGVPCHDETRLFEMLNLEGAQAGLSWETVLNKRDSYREAFD 66
           RC WVN  +  YV YHD EWGVPCHDETRLFEM+NLEGAQAGLSW TVLNKR+SYR AFD
Sbjct: 5   RCSWVNPDSALYVAYHDEEWGVPCHDETRLFEMINLEGAQAGLSWLTVLNKRESYRAAFD 64

Query: 67  GWDADKIARYDERRVAQLLANPGIVRNRLKVAATIGNARAYLKLCEEVGGLDPYLWGHVD 126
            WDA+KIARYD ++VA+LLANPGI+RN+LKVAATIGNA+AYL+L +EVGGLDPYLW +V 
Sbjct: 65  QWDAEKIARYDAKKVAELLANPGIIRNKLKVAATIGNAQAYLRLRDEVGGLDPYLWAYVG 124

Query: 127 GQPIVNRWASLADCPAKTPLSDAISKDLARRGFKFVGSTIIYAYLQGVGVINDHVRDCHC 186
           G+PI NRW ++   P KT LSD +SKDLA+RGFKFVGSTI+YAY+Q +G++NDH  DC C
Sbjct: 125 GKPIKNRWENIKQAPVKTALSDQLSKDLAKRGFKFVGSTIMYAYMQAIGLVNDHTVDCFC 184

Query: 187 HAG 189
           + G
Sbjct: 185 YKG 187


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.139    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 480,091
Number of extensions: 19200
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 111
Effective length of database: 932,655
Effective search space: 103524705
Effective search space used: 103524705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)