BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1253.p (526 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 345 4e-96 gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (... 339 2e-94 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 327 2e-90 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 327 2e-90 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 322 3e-89 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 345 bits (885), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 224/537 (41%), Positives = 329/537 (61%), Gaps = 45/537 (8%) Query: 1 MLGITKLSIGARLYGVSGLLIAALSALAITSWVQLSQVNQLAHRVGEVRVTQLALIASTE 60 M I + I +L G++ A L + + S +QL Q+N + + R + L S + Sbjct: 1 MKMIANMKIRQKLTLSFGVVFALLVVITLLSNIQLGQLNNSIKLISKDRYPKTILANSVQ 60 Query: 61 LNLTRVMVDLRQALLVKDAAQIRAALADVDAMRKQI------------TDNDNAYLKDVP 108 + + ++ ++LR +L D A+I+ ++D A K++ T+ DN Y+ Sbjct: 61 IEVNKIALNLRDIMLSSDPAKIKQLVSDTQASDKKMNEGLEQLRAVAQTEEDNRYVSAAI 120 Query: 109 TQEGRDAFDRNWLKLQQVTWPVAEANMALIRDGRTDDAMTMLEQKTAPAFAPLQ-KWLSE 167 RD + P + + L +DG+T +A T L+Q F P+Q K+ Sbjct: 121 V--ARDQY-----------VPARDTLLQLAQDGKTAEAKTYLDQ----VFMPVQVKYFIA 163 Query: 168 ERA---RQGSSVGQEVLDI-GNSANLMRMQLTSLVVVIAIGLSLF-----SWYIGRVLRS 218 A QGS ++++ G++A+ +Q +++ ++A G+SL W++ R + Sbjct: 164 LDAMFDYQGS-----LMNVAGDAASATSVQARTIINILA-GISLLLSIAVGWWVTRSITR 217 Query: 219 RVVQSQQVAQRVKDGDFTVEVRDDARDEFSPLLHTLGEMQTSLTGVVRSVRGNAEYVATA 278 + + VA+RV GD + V +E L+ L M +L +V VR +A A Sbjct: 218 PLNTAVGVARRVAQGDLSGPVFVKTTNEVGQLMAALKTMNDNLHHIVTQVRNGTGTIANA 277 Query: 279 SAEISKGNNDLAQRTESQASALEETAASMEELSTTVTQNVDSAREADSLTKAASDIARKG 338 S EI++GN DL+ RTE QAS+LEETA++MEEL++TV +N D+A++A+ L +A+ +AR+G Sbjct: 278 SGEIARGNMDLSSRTEQQASSLEETASAMEELTSTVRENADNAQQANQLAASATKVARQG 337 Query: 339 GEVVSEVVQTMRNINESSKHIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 398 G VV EV+ TM IN SSK IADI GVID IAFQTNILALNAAVEAARAGEQGRGFAVVA Sbjct: 338 GSVVHEVIATMAAINTSSKKIADITGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVA 397 Query: 399 SEVRSLAGRSAEAAKQIKGLITVSVERIEHGTQLVDQAGQTMDEVVASVARVTDIMSRIN 458 SEVR+LA RSA AA +IK LI SV ++++G++LV QAG T+DEVV SV ++ I++ I+ Sbjct: 398 SEVRNLAQRSATAAMEIKALIDDSVAKVDNGSKLVQQAGLTIDEVVTSVGSLSGIVAAIS 457 Query: 459 EASVEQSAGVGQVSEAVTQMDQVTQQNAALVEQTAAAAESLKGQAQQLVNAMSVFKL 515 AS EQSAG+ QV +A+ Q+D+ TQQNAALVEQ+AAAA+SL+ QA QL+ +S+FKL Sbjct: 458 NASQEQSAGIEQVGQAIVQIDEGTQQNAALVEQSAAAAQSLREQADQLMQLVSIFKL 514 >gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 339 bits (870), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 239/520 (45%), Positives = 334/520 (64%), Gaps = 28/520 (5%) Query: 5 TKLSIGARLYGVSGLLIAALSALAITSWVQLSQVNQLAHRVGEVRVTQLALIASTELNLT 64 +KLS+G +GV+ LL ++ A+ ++++Q++ + E+R QL + + L Sbjct: 9 SKLSLG---FGVTALLTLLIAVFAL---MRINQIDGVIATQNEIRTQQLERLYTAREALG 62 Query: 65 RVMVDLRQALLVKDAAQIRAALADVDAMRKQITDNDNAYLKDVPTQEGRDAFDRNWLKLQ 124 + + R A + + A AL ++D + +Q +A K P +G D N+ K+ Sbjct: 63 QTGLAARNAYIFTNKAD---ALKELDILDEQKAIYLDALAKMTPFFKG----DANFEKVS 115 Query: 125 QVTWPVAEANMALIRDGRTDDAMTMLEQKTAPAFAPLQKWLSEERARQGSSVGQEVLDIG 184 + +AE + R R D M + +PL++ + + +S+ Q+++D+ Sbjct: 116 KGLLTMAE-ELKRPRQFRDADQMEAFGKFLVNECSPLRRQIVADIGTVVTSM-QKIVDVK 173 Query: 185 N-SANL-------MRMQLTSLVVVIAIGLSL-FSWYIGRVLRSRVVQSQQVAQRVKDGDF 235 + ANL + + ++++ ++++IGL + S I R L V+ VAQ V GD Sbjct: 174 SQEANLAAQQSITIIIAISAVALLLSIGLGIVISRSITRPLNEAVL----VAQTVASGDL 229 Query: 236 TVEVRDDARDEFSPLLHTLGEMQTSLTGVVRSVRGNAEYVATASAEISKGNNDLAQRTES 295 T ++ ++DE LL L +M SL G+V VR +ATAS +I+ GN DL+ RTE Sbjct: 230 TSQINVKSKDETGQLLQALKDMNQSLIGIVDEVRSGTATMATASNQIASGNMDLSSRTEE 289 Query: 296 QASALEETAASMEELSTTVTQNVDSAREADSLTKAASDIARKGGEVVSEVVQTMRNINES 355 QAS+LEETA+SMEEL++TV QN D+AR+A+SL+ +AS+IA KGG+VVSEVV TM IN+S Sbjct: 290 QASSLEETASSMEELTSTVKQNADNARQANSLSLSASEIAVKGGQVVSEVVVTMNGINDS 349 Query: 356 SKHIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAGRSAEAAKQI 415 +K I DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LA RSA AAK+I Sbjct: 350 AKKITDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEI 409 Query: 416 KGLITVSVERIEHGTQLVDQAGQTMDEVVASVARVTDIMSRINEASVEQSAGVGQVSEAV 475 K LI SV R++ G++LV QAG TM EVV SV RVTDIM+ I AS EQSAG+ QV++A+ Sbjct: 410 KALIDDSVGRVDTGSKLVVQAGSTMTEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAI 469 Query: 476 TQMDQVTQQNAALVEQTAAAAESLKGQAQQLVNAMSVFKL 515 QMD VTQQNAALVE+ AAAA SLK QA +L +SVFK+ Sbjct: 470 AQMDHVTQQNAALVEEAAAAAGSLKDQAVKLEQTVSVFKI 509 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 327 bits (837), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 230/522 (44%), Positives = 320/522 (61%), Gaps = 27/522 (5%) Query: 7 LSIGARLYGVSGLLIAALSALAITSWVQLSQVNQLAHRVGEVRVTQLALIASTELNLTRV 66 L IG RL G ++ L LA ++ ++ +N V R + L + +L ++ Sbjct: 4 LKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDLNQI 63 Query: 67 MVDLRQALLVKDAAQIRAALADVDAMRKQITDNDNAYL----KDVPTQEGRDAF-----D 117 ++R ALL+ + A I+A L + + TD+ N L K V ++ GR D Sbjct: 64 ARNMRNALLMTEKAAIQAELTQIG----KATDSLNNALVELEKTVRSERGRQTIAGLQAD 119 Query: 118 RNWLKLQQVTWPVAEANMALIRDGRTDDAMTMLEQKTAPA----FAPLQKWLSEERARQG 173 R+ P+ + + L G D+A+ +L + PA A + K + + Sbjct: 120 RSKF------LPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMK 173 Query: 174 SSVGQEVLDIGNSANLMRMQLTSLVVVIAIGLSLFSWYIGRVLRSRVVQSQQVAQRVKDG 233 S G E + L+ + + V+IA ++F+ R + + Q+ +A++V DG Sbjct: 174 KS-GAEANAKASQTQLLIGIFSIIAVLIA---AVFAVLATRSITRPLSQAVVLARKVADG 229 Query: 234 DFTVEVRDDARDEFSPLLHTLGEMQTSLTGVVRSVRGNAEYVATASAEISKGNNDLAQRT 293 D T + +++DE LL L +M L +V VR + +A+AS +I+ GN DL+ RT Sbjct: 230 DLTGSIVVESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRT 289 Query: 294 ESQASALEETAASMEELSTTVTQNVDSAREADSLTKAASDIARKGGEVVSEVVQTMRNIN 353 E QAS+LEETA+SMEEL++TV QN ++AR+++ L +AS++A +GG VVS+VV TM IN Sbjct: 290 EQQASSLEETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEIN 349 Query: 354 ESSKHIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAGRSAEAAK 413 +S+K I DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LA RSA AAK Sbjct: 350 DSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAK 409 Query: 414 QIKGLITVSVERIEHGTQLVDQAGQTMDEVVASVARVTDIMSRINEASVEQSAGVGQVSE 473 +IK LI SV+++ G++LVD AG TM EVV SV RVTDIMS I AS EQ+ G+ Q+++ Sbjct: 410 EIKELIGDSVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQ 469 Query: 474 AVTQMDQVTQQNAALVEQTAAAAESLKGQAQQLVNAMSVFKL 515 AV QMDQVTQQNAALVE+ AAAAESL+GQA L + VFKL Sbjct: 470 AVMQMDQVTQQNAALVEEAAAAAESLQGQASHLSQVVGVFKL 511 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 327 bits (837), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 215/453 (47%), Positives = 299/453 (66%), Gaps = 13/453 (2%) Query: 69 DLRQALLVKDAAQIRAALADVDAMRKQITDNDNAYLKDVPTQEGRDAFDRNWLKLQQVTW 128 ++R ALL+ DAAQI+ L ++ I + + + + +++GR + + + Sbjct: 66 NMRNALLMTDAAQIKGELDTIEKGSVTIAEALDKLDRTIKSEKGR-TYIKALTDARGRFT 124 Query: 129 PVAEANMALIRDGRTDDAMTMLEQKTAPAFAPLQKWLSEERARQGSS-----VGQEVLDI 183 PV + +AL+ G +A +L + PA L+ L +R + S G++ ++ Sbjct: 125 PVKDKFVALVAQGMRAEAQILLFAEVRPA--QLEYMLGLDRLVEFQSNLMHKAGEDAHEV 182 Query: 184 GNSANLMRMQLTSLVVVIAIGLSLFSWYIG-RVLRSRVVQSQQVAQRVKDGDFTVEVRDD 242 +A QL ++ VIA+ +S F ++ R + + Q+ +A++V DGD T + Sbjct: 183 SANAQ----QLVGILSVIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIVVT 238 Query: 243 ARDEFSPLLHTLGEMQTSLTGVVRSVRGNAEYVATASAEISKGNNDLAQRTESQASALEE 302 ++DE LL L +M L +V VR + +ATAS++I+ GN DL+ RTE QAS+LEE Sbjct: 239 SKDETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEE 298 Query: 303 TAASMEELSTTVTQNVDSAREADSLTKAASDIARKGGEVVSEVVQTMRNINESSKHIADI 362 TA+SMEEL++TV QN D+AR+++ L AS++A +GG VVS+VV+TM +IN+S+ I DI Sbjct: 299 TASSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVDI 358 Query: 363 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAGRSAEAAKQIKGLITVS 422 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LA RSA AAK+IK LI S Sbjct: 359 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDDS 418 Query: 423 VERIEHGTQLVDQAGQTMDEVVASVARVTDIMSRINEASVEQSAGVGQVSEAVTQMDQVT 482 VE++ +G++LV AG TM EVV SV RVTDIM I AS EQ+ G+ Q+++AV QMDQVT Sbjct: 419 VEKVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQVT 478 Query: 483 QQNAALVEQTAAAAESLKGQAQQLVNAMSVFKL 515 QQNAALVE+ AAAAESL+ QA L +SVFKL Sbjct: 479 QQNAALVEEAAAAAESLQDQANNLSQVVSVFKL 511 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 322 bits (826), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 201/397 (50%), Positives = 267/397 (67%), Gaps = 18/397 (4%) Query: 132 EANMALIRDGRTDDAMTMLEQKTAPAFAPLQKWLSE----ERARQGSSVGQEVLDIGNSA 187 E M L +G+ +A + PA + +E ER + + Q + D+ ++ Sbjct: 131 EGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEFVELERKQMDAGTAQ-LSDVEAAS 189 Query: 188 NLMRMQLTSLVVVIAIGLSLFSWY----IGRVLRSRVVQSQQVAQRVKDGDFTVEVRDDA 243 M L+++V+ I +W I R L++ V A+RV GD T +++ ++ Sbjct: 190 TRQLMLLSAMVLAFGI---FCAWRLTIGITRPLKTAV----DAARRVAGGDLTNDIKAES 242 Query: 244 RDEFSPLLHTLGEMQTSLTGVVRSVRGNAEYVATASAEISKGNNDLAQRTESQASALEET 303 +DE LL L +M L +V VR E + TAS EI+ GN DL+ RTE QAS+LEET Sbjct: 243 KDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQQASSLEET 302 Query: 304 AASMEELSTTVTQNVDSAREADSLTKAASDIARKGGEVVSEVVQTMRNINESSKHIADII 363 A+SMEEL++TV QN D+AR+A+ L +AS++A KGG+VVS+VVQTM +INESS+ I DII Sbjct: 303 ASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINESSRKIVDII 362 Query: 364 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAGRSAEAAKQIKGLITVSV 423 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLA RSA AAK+IK LI SV Sbjct: 363 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKALIGDSV 422 Query: 424 ERIEHGTQLVDQAGQTMDEVVASVARVTDIMSRINEASVEQSAGVGQVSEAVTQMDQVTQ 483 +++ G +LV +AG TMDE+V S+ RVTDIM I AS EQSAG+ Q+++A+ QMD VTQ Sbjct: 423 GKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQAIGQMDHVTQ 482 Query: 484 QNAALVEQTAAAAESLKGQAQQLVNAMSVFKL--AQE 518 QNA+LVE+ AAAAES++ QA++L + FKL AQE Sbjct: 483 QNASLVEEAAAAAESMQDQARKLGQVVGAFKLDNAQE 519 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.126 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 857,290 Number of extensions: 28918 Number of successful extensions: 229 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 171 Number of HSP's successfully gapped: 21 Length of query: 526 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 438 Effective length of database: 895,685 Effective search space: 392310030 Effective search space used: 392310030 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)