BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1245.p
         (304 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979907|ref|YP_001352538.1| ornithine carbamoyltransferase ...   556   e-160
gi|152980634|ref|YP_001354637.1| aspartate carbamoyltransferase ...    85   7e-18

>gi|152979907|ref|YP_001352538.1| ornithine carbamoyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 304

 Score =  556 bits (1432), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 260/304 (85%), Positives = 280/304 (92%)

Query: 1   MAIKHYLQFSDFTLDEYEYVIERSRVIKRKFKNYEPHHTLADRTLVMVFEKNSTRTRLSF 60
           MAIKH+LQFSD TLDE+E+VIER+RVIKRKFKNYEP+H L+DRTLVMVFEKNSTRTRLSF
Sbjct: 1   MAIKHFLQFSDLTLDEFEHVIERTRVIKRKFKNYEPYHPLSDRTLVMVFEKNSTRTRLSF 60

Query: 61  EAGMHQMGGAAIYLNTRDSQLGRGEPVEDAAQVMSRMCDVIMIRTYGQEIIERFAKHSRV 120
           EAGMHQ+GGAAIYLNTRDSQLGRGEPVEDAAQVMSRMCD+IMIRT+GQEIIERFA +SRV
Sbjct: 61  EAGMHQLGGAAIYLNTRDSQLGRGEPVEDAAQVMSRMCDIIMIRTFGQEIIERFAANSRV 120

Query: 121 PVINGLTNEQHPCQVLADVFTYIEHRGSIQGKIVAWVGDANNMLYSWLQAAEVFGFHVNV 180
           PVINGLTNE HPCQVLADVFTYIE RGSI+GK VAW+GDANNMLYSWLQAA+VF FHVNV
Sbjct: 121 PVINGLTNEHHPCQVLADVFTYIEQRGSIKGKTVAWIGDANNMLYSWLQAAQVFDFHVNV 180

Query: 181 STPKGYDIDPAQVSPGNQHYTFFADPADACQDADLVTTDVWTSMGYEAENNARLKAFDGW 240
           STPKGY+IDP  V+  N HYT +A P+DAC  A LVTTDVWTSMG+E EN ARLKAFDGW
Sbjct: 181 STPKGYEIDPTLVAQDNTHYTLYASPSDACAGAHLVTTDVWTSMGFEEENAARLKAFDGW 240

Query: 241 IVDQAKMARAKKDALFMHCLPAHRGEEVAAEVIDGPQSVVWEEAENRLHVQKALLEYLVH 300
           IVD AKM RA+ DALFMHCLPAHRGEEVAAEVIDGPQSVVW+EAENRLHVQKALLEYLV 
Sbjct: 241 IVDAAKMKRAQPDALFMHCLPAHRGEEVAAEVIDGPQSVVWDEAENRLHVQKALLEYLVL 300

Query: 301 GRFE 304
           GR E
Sbjct: 301 GRLE 304


>gi|152980634|ref|YP_001354637.1| aspartate carbamoyltransferase
           catalytic subunit [Janthinobacterium sp. Marseille]
          Length = 319

 Score = 84.7 bits (208), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 22/271 (8%)

Query: 43  RTLVMVFEKNSTRTRLSFEAGMHQMGGAAIYLNTRDSQLGRGEPVEDAAQVMSRM-CDVI 101
           +++  +F +NSTRTR +FE    ++    I LN + S   +GE + D    +S M  D+ 
Sbjct: 53  KSVFNLFFENSTRTRTTFEIASKRLSADVINLNIQASSSSKGESLLDTIDNLSAMHADMF 112

Query: 102 MIRTYGQEIIERFAKH------SRVPVIN-GLTNEQHPCQVLADVFTYIEHRGSIQGKIV 154
           ++R          AKH      S V V+N G     HP Q L D++T   ++       V
Sbjct: 113 VVRHAQSGAPYLIAKHLSDTSQSHVHVVNAGDGRHAHPTQGLLDMYTIRHYKKDFSNLTV 172

Query: 155 AWVGDANNMLYSWLQAAEVFGFHVNVSTPKGYDIDPAQVSPGN---QHYTFFADPADACQ 211
           A VGD   +L+S +  +++      +  P+   I P  + P          F D     +
Sbjct: 173 AIVGD---ILHSRVARSDIHAL-TTLGVPEIRAIGPRTLLPSGLEQMGVRVFTDINKGLK 228

Query: 212 DADLVTTDVWTSMGYEAENNARLKA----FDGWIVDQAKMARAKKDALFMHCLPAHRGEE 267
           D D++   +   +  E  + A L +    F  + +   ++A AK DA+ MH  P +RG E
Sbjct: 229 DVDVI---IMLRLQNERMSGALLPSAQEFFKSYGLTTERLALAKPDAIVMHPGPMNRGVE 285

Query: 268 VAAEVIDGPQSVVWEEAENRLHVQKALLEYL 298
           + + V DG Q+V+  +    + V+ A++  L
Sbjct: 286 IESAVADGTQAVILPQVTFGIAVRMAVMSIL 316


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 708,220
Number of extensions: 27842
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 2
Length of query: 304
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 221
Effective length of database: 914,170
Effective search space: 202031570
Effective search space used: 202031570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)