BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1242.p
         (343 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979923|ref|YP_001352531.1| UDP-N-acetylmuramate dehydrogen...   494   e-141

>gi|152979923|ref|YP_001352531.1| UDP-N-acetylmuramate dehydrogenase
           [Janthinobacterium sp. Marseille]
          Length = 342

 Score =  494 bits (1272), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 243/341 (71%), Positives = 281/341 (82%)

Query: 3   TSSLPVQHDVSLRSLNTFGIEAHAHAYLPVEGVESLRTLRQDAALMALPRLVLGGGSNLL 62
           T SLPVQ++ SLR LNTFG+ A A AYLPV  V  L  +RQDAAL ALPRLVLGGGSN+L
Sbjct: 2   THSLPVQYNFSLRQLNTFGVAASAQAYLPVSNVAQLEQVRQDAALAALPRLVLGGGSNIL 61

Query: 63  LTQDFSGLVLHMQGRGIEITGEDENFTYVRAAAGENWHAFVQWTLQQGLGGLENLSLIPG 122
           LT+DF GLVLH+  +GIEI GED++ TYVRAAAGENWH FVQWTL QGLGGLENLSLIPG
Sbjct: 62  LTRDFPGLVLHIGIKGIEIVGEDDSATYVRAAAGENWHQFVQWTLAQGLGGLENLSLIPG 121

Query: 123 SVGAAPIQNIGAYGIEIKDRFHSLRAFDLVSGELLTLDRDACLFGYRDSIFKHELRERAV 182
           SVGAAPIQNIGAYG+EIKD FHSL  FD  +GE L LD++AC+FGYRDS+FKH LR+RAV
Sbjct: 122 SVGAAPIQNIGAYGVEIKDSFHSLTLFDFETGEQLVLDKEACMFGYRDSVFKHRLRDRAV 181

Query: 183 VLEVSFALPKRWQANANYADVAQALQERGITEPGPRDIAEAVIAIRTRKLPDPAKIGNAG 242
           VL+V+FALPK+WQ N  YADV Q L  R I++P P+DI+ AVIAIRTRKLPDPA +GNAG
Sbjct: 182 VLDVTFALPKQWQPNLRYADVTQELAARSISQPTPQDISAAVIAIRTRKLPDPAVVGNAG 241

Query: 243 SFFKNPIVPARLRDTLLAQYANLVSYRVDDEHYKLAAGWLIDRCGWKGRNMGRAGVYEQQ 302
           SFFKNP+V    RD LL +Y  +V+Y   D   KLAAGWLID+CGWKGR  G AGVYE+Q
Sbjct: 242 SFFKNPVVTTEQRDALLQRYPQMVNYAQPDGSVKLAAGWLIDQCGWKGRTAGAAGVYEKQ 301

Query: 303 ALVLVNRGGATGAEVARLAQAIQEDVKEKFGVQLEPEPVFI 343
           ALVLVNRGGA+GAE+A+LA AIQ DV ++F VQLEPEP+F+
Sbjct: 302 ALVLVNRGGASGAEIAQLAAAIQADVAQRFAVQLEPEPIFL 342


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 841,084
Number of extensions: 36565
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 259
Effective length of database: 910,473
Effective search space: 235812507
Effective search space used: 235812507
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)