BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1240.p
         (357 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979985|ref|YP_001352528.1| phospho-2-dehydro-3-deoxyhepton...   645   0.0  

>gi|152979985|ref|YP_001352528.1| phospho-2-dehydro-3-deoxyheptonate
           aldolase [Janthinobacterium sp. Marseille]
          Length = 355

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/352 (87%), Positives = 325/352 (92%)

Query: 1   MPRTDDLRIREMKELVPPSHLIREFACTEKVERTTAEARTALHRILHGQDDRLMVVIGPC 60
           MPRTDDLRIREMKEL PPSHLIRE   ++K E T A AR ALHRILHGQDDRLMVVIGPC
Sbjct: 1   MPRTDDLRIREMKELTPPSHLIRELGISDKAETTAANARIALHRILHGQDDRLMVVIGPC 60

Query: 61  SIHDTKAAMEYARRLVVERERHKNELEIVMRVYFEKPRTTVGWKGLINDPYMDNSFRIND 120
           SIHD KAAMEYA RL+ ERER+  ELEI+MRVYFEKPRTTVGWKGLINDP+MDNSFRIND
Sbjct: 61  SIHDPKAAMEYANRLIKERERYAGELEIIMRVYFEKPRTTVGWKGLINDPFMDNSFRIND 120

Query: 121 GLRAARELLLNINELGLPAGTEFLDVISPQYIADLISWGAIGARTTESQVHRELASGLSC 180
           GLR ARELLLNINELGLPAGTEFLDVISPQYIADLISWGAIGARTTESQVHRELASGLSC
Sbjct: 121 GLRIARELLLNINELGLPAGTEFLDVISPQYIADLISWGAIGARTTESQVHRELASGLSC 180

Query: 181 PVGFKNGTDGNVKIAVDAIKAASQPHHFLSVTKGGHSAIVSTAGNEDCHIILRGGKQPNY 240
           PVGFKNGTDGNVKIAVDAIKAASQPHHFLSVTKGGHSAIVST GNEDCHIILRGGK PNY
Sbjct: 181 PVGFKNGTDGNVKIAVDAIKAASQPHHFLSVTKGGHSAIVSTLGNEDCHIILRGGKTPNY 240

Query: 241 DAPSVDAACQDIAKSGLAARLMIDASHANSSKKPENQIPVCADIGRQIAGGDTRIVGVMV 300
           DA SV+ AC+DIA +GLA+RLMID SHANSSKKPENQIPVCADI +Q+AGGDTRIVGVMV
Sbjct: 241 DAASVEQACKDIAANGLASRLMIDTSHANSSKKPENQIPVCADIAKQVAGGDTRIVGVMV 300

Query: 301 ESHLVAGRQDLVPGKELTYGQSITDGCINWEESLQVLQGLADSVKQRRLVGD 352
           ESHLV GRQDL+PGKEL YGQS+TDGCINWE+SL VL+GLA++VKQRR V D
Sbjct: 301 ESHLVGGRQDLIPGKELVYGQSVTDGCINWEDSLGVLEGLAEAVKQRRHVKD 352


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 828,603
Number of extensions: 34159
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 273
Effective length of database: 910,473
Effective search space: 248559129
Effective search space used: 248559129
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)