BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1239.p
         (486 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981200|ref|YP_001352527.1| TldD protein [Janthinobacterium...   889   0.0  
gi|152980976|ref|YP_001352824.1| PmbA protein [Janthinobacterium...    70   3e-13

>gi|152981200|ref|YP_001352527.1| TldD protein [Janthinobacterium
           sp. Marseille]
          Length = 486

 Score =  889 bits (2298), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/486 (90%), Positives = 462/486 (95%)

Query: 1   MKLFEPNMGALQVARDVLLTPFGLDESKLLKALGSMFTHKVDYADLYFQFTKSEGWSLEE 60
           M  FEPN+  L VARDVLLTPFGLDES L+K LG+MFTH+VDYADLYFQFTKSEGWSLEE
Sbjct: 1   MTPFEPNLKTLAVARDVLLTPFGLDESILIKTLGTMFTHRVDYADLYFQFTKSEGWSLEE 60

Query: 61  GIVKTGSFSIDQGVGVRAVSGDKTAFSYSDEISESALMDAAAATRTIARQGSGKIKVAGA 120
           GIVKTGSFSIDQGVGVRAVSGDKTAFSYSDEISE AL++AA ATRTIARQG+GK+KVA A
Sbjct: 61  GIVKTGSFSIDQGVGVRAVSGDKTAFSYSDEISERALLEAALATRTIARQGAGKVKVASA 120

Query: 121 MTLAGGRALYLPHDPLTSLDATAKVQLLERVERIARAKDPRVKQVMASLSGEYDVVLVAR 180
           +   GGR+LYLPHDPLTSLDAT KV+LLE++ERIARAKDPRV QVMA L+GEYDVVLV R
Sbjct: 121 IQAGGGRSLYLPHDPLTSLDATEKVKLLEKIERIARAKDPRVVQVMAGLAGEYDVVLVVR 180

Query: 181 ADGVLAADIRPLVRVSVTVIAEQNGRREMGSSGGGGRYDYAYFSDTLLEKYASEAVATAL 240
           +DGVLAADIRPLVRVS+TVIAEQNGRREMGSSGGGGRY YAYF D LLEKYASEAVA+AL
Sbjct: 181 SDGVLAADIRPLVRVSITVIAEQNGRREMGSSGGGGRYSYAYFDDELLEKYASEAVASAL 240

Query: 241 VNLDARPAPAGPMTVVLGPGWPGILLHEAIGHGLEGDFNRKGSSTFSGRIGERVAAKGVT 300
           VNL+ARPAPAGPMTVVLGPGWPG+LLHEAIGHGLEGDFNRKGSS FSGRIGERVAAKGVT
Sbjct: 241 VNLEARPAPAGPMTVVLGPGWPGVLLHEAIGHGLEGDFNRKGSSAFSGRIGERVAAKGVT 300

Query: 301 VVDDGTIADRRGSLNIDDEGNPTQCTTLIEDGILKGYIQDTMNARLMKMDVTGNARRESF 360
           VVDDGTIADRRGSLNIDDEGNPTQCTTLIEDGILKGYIQDTMNARLMKM VTGNARRESF
Sbjct: 301 VVDDGTIADRRGSLNIDDEGNPTQCTTLIEDGILKGYIQDTMNARLMKMPVTGNARRESF 360

Query: 361 AHLPMPRMTNTYMLGGDKDPGEILASVKNGLYAVNFGGGQVDITNGKFVFSASEAYMIED 420
           AHLPMPRMTNTYMLGGDKDP EILASVKNGLYAVNFGGGQVDITNGKFVFSASEAYMIED
Sbjct: 361 AHLPMPRMTNTYMLGGDKDPAEILASVKNGLYAVNFGGGQVDITNGKFVFSASEAYMIED 420

Query: 421 GKITYPVKGATLIGNGPDVLNRVSMIGNDMRLDPGVGVCGKEGQSVPVGVGQPTLRLDGV 480
           GK+TYPVKGATLIGNGPDVLNRVSMIGNDMRLD GVGVCGKEGQSVPVGVGQPTLR+DGV
Sbjct: 421 GKVTYPVKGATLIGNGPDVLNRVSMIGNDMRLDSGVGVCGKEGQSVPVGVGQPTLRIDGV 480

Query: 481 TVGGTA 486
           TVGGTA
Sbjct: 481 TVGGTA 486


>gi|152980976|ref|YP_001352824.1| PmbA protein [Janthinobacterium
           sp. Marseille]
          Length = 454

 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 115/412 (27%), Positives = 175/412 (42%), Gaps = 43/412 (10%)

Query: 57  SLEEGIVKTGSFSIDQGVGVRA-VSGD---KTAFSYSDEISESALMDAAAATRTIARQGS 112
           S+ +G V+T   + D+G+GV   + GD   +   + + + S+ AL D   A   IAR  +
Sbjct: 45  SVRKGGVETIEQNKDKGMGVTVYLGGDGHVRRGNASTSDFSQQALKDTVEAAYNIAR-FT 103

Query: 113 GKIKVAGA----MTLAGGRALYLPHDPLTSLDATAKVQLLERVERIARAKDPRVKQVM-A 167
            +   AG     M     R L L +  L S +    V+L +R E  A A D R+     A
Sbjct: 104 AEDDCAGLPEVDMLELNPRDLQLCYPWLISSEEA--VELAKRGEAAAFAVDKRITNSEGA 161

Query: 168 SLSGEYDVVLVARADGVLAADIRPLVRVSVTVIAEQNGRREMGSSGGGGRYDYAYFSDTL 227
           S+  +    + A + G +     P  R +++V         +   G   + D  Y S   
Sbjct: 162 SIYAQQSHFVSANSRGFIGG--YPYSRHTISVAP-------IAGKGSNMQRDDWYSSMRD 212

Query: 228 LEKYAS-EAVAT-----ALVNLDARPAPAGPMTVV----LGPGWPGILLHEAIGHGLEGD 277
            +K A  EAV       AL  L+AR        V+    L  G  G  +    G    G 
Sbjct: 213 PKKLAKPEAVGQYAAQRALARLNARKIDTRKCPVLFEAPLAAGLLGAFVQAVSG----GA 268

Query: 278 FNRKGSSTFSGRIGERVAAKGVTVVDDGTIADRRGSLNIDDEGNPTQCTTLIEDGILKGY 337
             RK S+     +G+   A  V +V+D  +    GS   D+EG  T    +++DGI++GY
Sbjct: 269 LYRK-STFLLDSLGKPAFAPHVQIVEDPHVIGGVGSSPFDEEGVKTSRRDVVKDGIVQGY 327

Query: 338 IQDTMNARLMKMDVTGNARRESFAHLPMPRMTNTYMLGGDKDPGEILASVKNGLYAVNFG 397
              T +AR + M  TGNA     +H     MT++     D D   +L  +  GL      
Sbjct: 328 FLSTYSARKLGMQTTGNA---GGSH--NLSMTSSLTKSTD-DFKAMLKKLDTGLLVTELM 381

Query: 398 GGQVDITNGKFVFSASEAYMIEDGKITYPVKGATLIGNGPDVLNRVSMIGND 449
           G  V+   G +   AS  + +E G I YPV+  T+ GN  D+  +V  IG D
Sbjct: 382 GQGVNYVTGDYSRGAS-GFWVEKGVIQYPVEEITIAGNMKDIFMQVVAIGAD 432


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,165,523
Number of extensions: 51943
Number of successful extensions: 161
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 2
Length of query: 486
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 399
Effective length of database: 899,382
Effective search space: 358853418
Effective search space used: 358853418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)