BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1236.p
         (922 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980955|ref|YP_001352524.1| glutamate-ammonia-ligase adenyl...  1240   0.0  

>gi|152980955|ref|YP_001352524.1| glutamate-ammonia-ligase
           adenylyltransferase [Janthinobacterium sp. Marseille]
          Length = 901

 Score = 1240 bits (3209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/903 (68%), Positives = 712/903 (78%), Gaps = 8/903 (0%)

Query: 26  LVDASTSRYYTRWTQADPARSALIASTAAQAIDRTIMQQRLEQDLAAGLSLPGAMRRLRN 85
           +   + SR+YTRW  AD +R+  +A     +++  +  + L+ +  +G SLP AMRRLRN
Sbjct: 1   MTQVAASRFYTRWINADESRAQKVAEVGKLSLNPEVFARILQNETDSGASLPAAMRRLRN 60

Query: 86  LIVCTLITRDLDGRADLAEVVATMTDFADFAVQTHLAALMQEQVALYGTPIGEESGRPQE 145
           L++ TLI RDL G+ADLAEVV TMT F DFAVQ HLAA+M + VA++GTP+G ESG  QE
Sbjct: 61  LVIVTLIRRDLSGQADLAEVVDTMTAFGDFAVQQHLAAVMADMVAIHGTPVGAESGETQE 120

Query: 146 MIVLGMGKLGGGELNVSSDIDLIFVYPEDGDT-QAEAGQKSLSNHEFFVRLGKKLIGALA 204
           MIVLGMGKLGGGELNVSSDIDLIFVYPEDG+T      Q+ LSNHEFF RLGKKLI AL+
Sbjct: 121 MIVLGMGKLGGGELNVSSDIDLIFVYPEDGETVTTTPEQRQLSNHEFFTRLGKKLIAALS 180

Query: 205 EITEDGFTFRVDMALRPNGNSGPLVASFNMVEEYLVRQGREWERYAWTKARALTGTAEDI 264
           EITEDGFTFRVDMALRPNG SGPL ASF MVEEYL+ QGREWERYAW KARALTG   DI
Sbjct: 181 EITEDGFTFRVDMALRPNGVSGPLAASFGMVEEYLIVQGREWERYAWVKARALTGKPADI 240

Query: 265 ATLEAISRPFIFRRYLDFGSIDALRSMHGQIRAEVKRQEALHPDRSNNVKLGRGGIREIE 324
             LE I RPF++RRYLD+GSIDA+R+MH QIRAEV RQEA HPDRSNNVKLGRGGIREIE
Sbjct: 241 EALEKIIRPFVYRRYLDYGSIDAIRNMHAQIRAEVTRQEARHPDRSNNVKLGRGGIREIE 300

Query: 325 FTSQVFQLIRGGRDPDLRDRSTRTTLRTLAAKDLLAPEVVAQLLEAYTFLRDLEHRLQYL 384
           F +QVFQLIRGGRD  LRDRSTR TLR LA K L  PEVV QLL AYTFLR+LEHRLQYL
Sbjct: 301 FLAQVFQLIRGGRDAALRDRSTRRTLRILAEKQLFKPEVVEQLLHAYTFLRNLEHRLQYL 360

Query: 385 EDAQTHTLPVNPEDLLLVANMMGYADSPALLRELERQRAIVATQFDAIFADKQSEADSDG 444
           +DAQTHTLP N  D L+VA MMGY D  +LL  LE QR +VATQFD IF+DK S+  +D 
Sbjct: 361 DDAQTHTLPANEADRLIVAQMMGYNDVASLLAALEEQRKLVATQFDEIFSDKASDNATDE 420

Query: 445 PTVA-----VSENDNLEGLTDALRLVGFPQEDIEDGARRLHLTWQSPRMQSLPEASRNRL 499
              A     +S++DN E +   L  + F  +   D A+RL  TW SPR+QSLPEASRN+L
Sbjct: 421 NVNAELSAVLSDSDNAEAIETYLTTLSF--DHAADSAQRLLSTWHSPRLQSLPEASRNKL 478

Query: 500 NTVINKCLPLLAALHYDQLPALGRLLDFLEAIARRAAYLALLTEYPYALQRLVRMIGASG 559
             ++N  LP++A +   +  AL RLL+F EAIARRAAYLALLTEYP+AL+R++RMI AS 
Sbjct: 479 VALVNASLPIVAKVTETRSLALNRLLNFFEAIARRAAYLALLTEYPHALERVIRMIAASD 538

Query: 560 WAATYLTRHPLLLDELLDDRNLKAGSDWVAFADTCRRQLSAAEGDTERQLDILRELHHAE 619
           WAA YLTRHP+LLDELLDDR LKA  DW AFA  CRR+L    GDTERQ+D LRE+HHA+
Sbjct: 539 WAAQYLTRHPILLDELLDDRTLKAAPDWNAFARDCRRRLDETPGDTERQMDALREMHHAQ 598

Query: 620 LFRLLAQDLEGELSVEKLADELSALADVLVQVTIEAVWQTIAQRHREVPRFAVIAYGKLG 679
           L RLLAQDL G+LSVE+LAD LS LAD LV  TI A+W+T+  RHRE P+F+VIAYGKLG
Sbjct: 599 LIRLLAQDLVGDLSVERLADHLSELADKLVAETIHAIWKTLPTRHREDPKFSVIAYGKLG 658

Query: 680 GKELGYASDLDVVFLYDDDDQEAPGLYAKLAQRFITWMTSHTPAGTLFDIDIALRPDGAS 739
           GKELGYASDLDV+FLYDDDDQEAP LYAKLAQRFITWMT+HTPAG LFD+DIALRPDGAS
Sbjct: 659 GKELGYASDLDVIFLYDDDDQEAPALYAKLAQRFITWMTAHTPAGILFDVDIALRPDGAS 718

Query: 740 GLLVSPVSSFEKYQLNAAWIWEHQALTRARFCAGDTAIGERFEALRERVLRQPRDVQKLE 799
           GLLVS VSSFEKYQ  +AW WEHQALTRARFCAGD  IG RFEA+R  VLRQ RD  KL+
Sbjct: 719 GLLVSTVSSFEKYQSTSAWPWEHQALTRARFCAGDADIGARFEAIRVNVLRQTRDPVKLK 778

Query: 800 EEVLSMRGRMREAHPNRSQMFDLKHDEGGMIDIEFMVQYLVLRHACDHPQLTGDIGNIAL 859
            +VL MR ++ +AHPNRS +FDLKHD GGMIDIEF+VQ+LVLR +  H +LTGDIGNIAL
Sbjct: 779 SDVLDMRKKLHDAHPNRSDLFDLKHDNGGMIDIEFIVQFLVLRDSAQHARLTGDIGNIAL 838

Query: 860 LKLAAQLGLIDDLLAAEAANAYRLFRKLQHQIRLQGSERAHIDAIRVEHERACVIRLWQQ 919
           LKL  +LGLID  L+ + A+AYR FRK+QHQIRLQG+ERA ++  RV  E A V  LW+ 
Sbjct: 839 LKLCGELGLIDQNLSGKVADAYRTFRKMQHQIRLQGAERARVETERVAKEIADVEALWKA 898

Query: 920 VFG 922
           VFG
Sbjct: 899 VFG 901


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 2,021,045
Number of extensions: 80197
Number of successful extensions: 205
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 1
Length of query: 922
Length of database: 1,221,021
Length adjustment: 92
Effective length of query: 830
Effective length of database: 880,897
Effective search space: 731144510
Effective search space used: 731144510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 134 (56.2 bits)