BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1231.p (664 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980222|ref|YP_001352521.1| transketolase [Janthinobacteriu... 1152 0.0 gi|152979790|ref|YP_001352021.1| 1-deoxy-D-xylulose-5-phosphate ... 60 5e-10 >gi|152980222|ref|YP_001352521.1| transketolase [Janthinobacterium sp. Marseille] Length = 664 Score = 1152 bits (2981), Expect = 0.0, Method: Compositional matrix adjust. Identities = 545/664 (82%), Positives = 592/664 (89%) Query: 1 MISTLPTDKMANAIRALAMDAVQKANSGHPGMPMGMAEIAVALWAKHYRHNPSNPHWANR 60 M STLPT KMANAIRALAMDAVQKANSGHPGMPMGMA+IAVALWA HY HNP+NP W NR Sbjct: 1 MTSTLPTTKMANAIRALAMDAVQKANSGHPGMPMGMADIAVALWANHYSHNPANPKWVNR 60 Query: 61 DRFVLSNGHGSMLQYALLHLTGYDLSMEDIKSFRQLHSKTAGHPEVHITPGVETTTGPLG 120 DRFVLSNGHGSML YALLHLTGYDLSM++I++FRQLHSKT GHPEV ITPG+ETTTGPLG Sbjct: 61 DRFVLSNGHGSMLHYALLHLTGYDLSMDEIRNFRQLHSKTPGHPEVDITPGIETTTGPLG 120 Query: 121 QGITNAVGMALAEKLLAAEFNKPGLAVVDHYTYAFVGDGCLMEGISHEACSLAGVLNLSK 180 QGITNAVGMALAEKLLAAEFN+PG VV+H+TY F+GDGCLMEGISHEACSLAG L LSK Sbjct: 121 QGITNAVGMALAEKLLAAEFNRPGFDVVNHHTYVFLGDGCLMEGISHEACSLAGTLRLSK 180 Query: 181 LIVLYDDNGISIDGHVEGWFKDDTPKRFEAYGWNVIPAVDGHNVEAVSAAIHQAKLADKP 240 LI LYDDNGISIDGHVEGWF DDTPKRFE+YGWNVI AVDGH+V AV AAI QAK +DKP Sbjct: 181 LIALYDDNGISIDGHVEGWFTDDTPKRFESYGWNVIRAVDGHDVNAVDAAIKQAKSSDKP 240 Query: 241 TLICCRTVIGKGSPNLAGTDKVHGAALGDKEIAAVREALGWTAAPFEIPADVYAAWDAKA 300 TLICCRTVIGKGSPN+ GT VHGAALGDKEIAA REA+GWT APF++PADVYAAWDAK Sbjct: 241 TLICCRTVIGKGSPNMEGTHNVHGAALGDKEIAATREAVGWTYAPFDVPADVYAAWDAKE 300 Query: 301 TGADFEASWKQTFDTYAAQYPAEAAELLRRLKGELPVAFESTVTAYINSTLEKKETIATR 360 G E++W +Y+ ++P EAAEL RR+ GELP V AYI + +EKKETIATR Sbjct: 301 KGQALESNWDTLLKSYSEKFPQEAAELARRMAGELPGDLNKAVDAYIAACVEKKETIATR 360 Query: 361 KASQNAIQAYAQALPEFLGGSADLTGSNLTNWKESVAVRADQRGNHINYGVREFGMSAIM 420 KASQNAIQA A LPEFLGGSADLTGSNLTNWKE VAVRADQ GNHINYGVREFGMSAIM Sbjct: 361 KASQNAIQALAPVLPEFLGGSADLTGSNLTNWKECVAVRADQAGNHINYGVREFGMSAIM 420 Query: 421 NGIALHGGYLPFGATFLTFSDYSRNALRMAALMKIRSLFVFTHDSIGLGEDGPTHQSVEH 480 NGIALHGGY+PFGATFLTFSDYSRNALRMAALMK+RS+FVFTHDSIGLGEDGPTHQSVEH Sbjct: 421 NGIALHGGYIPFGATFLTFSDYSRNALRMAALMKLRSIFVFTHDSIGLGEDGPTHQSVEH 480 Query: 481 VSSLRLIPNLDNWRPCDTTETAVAWAESIKRHDGPSTLIFSRQNLPFQERTDAQVKDIAR 540 VSSLRLIPNLDNWRPCDT E+AVAW +++KR DGPSTLIFSRQNLPFQERT Q+ +I R Sbjct: 481 VSSLRLIPNLDNWRPCDTVESAVAWEQAVKRKDGPSTLIFSRQNLPFQERTAEQIANIKR 540 Query: 541 GGYVLRDAPNAKVVLMATGSEIELATKAADALTAEGIAVRVVSMPSTDVFDRQDSAYKAT 600 GGYVLRDAPNAK +L+ATGSEIELATKAAD L+ G+AVR+VSMPSTDVFDRQD+AYKA Sbjct: 541 GGYVLRDAPNAKAILIATGSEIELATKAADELSKHGVAVRIVSMPSTDVFDRQDAAYKAG 600 Query: 601 VLPRGVPRVAIEAGVTAFWHKYVGLEGAVVGIDTFGESAPAGVLFKHFGFTVENVVAKAK 660 VL +GVPRVAIEAGVT+FW+KYVGLEG V+GIDTFGESAPAGVLFKHFGFTVENV+A K Sbjct: 601 VLTKGVPRVAIEAGVTSFWYKYVGLEGGVIGIDTFGESAPAGVLFKHFGFTVENVIAAVK 660 Query: 661 AVLA 664 LA Sbjct: 661 KTLA 664 >gi|152979790|ref|YP_001352021.1| 1-deoxy-D-xylulose-5-phosphate synthase [Janthinobacterium sp. Marseille] Length = 621 Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 120/298 (40%), Gaps = 70/298 (23%) Query: 9 KMANAIRALAMDAVQKANSGHPGMPMGMAEIAVALWAKHYRHNPSNPHWANRDRFVLSNG 68 ++A+ +RA +++V A GH +G E+ +AL HN N DR + G Sbjct: 23 QLADELRAFVLESVS-ATGGHLSSNLGTVELTIAL------HNVFN---TPEDRIIWDVG 72 Query: 69 HGSMLQYALLHLTGYDLSMEDIKSFRQLHSKTAGHPEVHITPGVETTTGPLGQGITNAVG 128 H + Y LTG + + S RQ+ +G P +P T I+ A+G Sbjct: 73 HQT---YPHKILTG---RRDQMHSLRQIDG-ISGFPRRDESPYDTFGTAHSSTSISAALG 125 Query: 129 MALAEKLLAAEFNKPGLAVVDHYTYAFVGDGCLMEGISHEACSLAGVLNLSKLIVLYDDN 188 MALA K D + A +GDG + G++ EA + AG+ + L+V+ +DN Sbjct: 126 MALAAKTKGE----------DRHAIAVIGDGAMTAGMAFEAMNNAGIHDDINLLVVLNDN 175 Query: 189 GISIDGHV-----------EGWF---------------KDDTPKR--------------F 208 +SI V G F + KR F Sbjct: 176 DMSISPPVGALNRYLARLMSGQFYAAAKNVGKTVLPAPMRELAKRFEEHAKGMIVPATMF 235 Query: 209 EAYGWNVIPAVDGHNVEAVSAAIHQAKLADKPTLICCRTVIGKGSPNLAGTDKV--HG 264 E +G+N I +DGH+++++ + K P + T G+G LA D V HG Sbjct: 236 EEFGFNYIGPIDGHDLDSLIPTLQNLKNLKGPQFLHVVTRKGQGY-KLAEADPVLYHG 292 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.132 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,631,749 Number of extensions: 71647 Number of successful extensions: 201 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 202 Number of HSP's successfully gapped: 2 Length of query: 664 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 575 Effective length of database: 891,988 Effective search space: 512893100 Effective search space used: 512893100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)