BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1229.p (606 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979784|ref|YP_001354768.1| allophanate hydrolase [Janthino... 542 e-155 gi|152981287|ref|YP_001352460.1| amidase [Janthinobacterium sp. ... 110 3e-25 gi|152980171|ref|YP_001351884.1| aspartyl/glutamyl-tRNA amidotra... 74 3e-14 gi|152981221|ref|YP_001352351.1| amidase [Janthinobacterium sp. ... 73 5e-14 >gi|152979784|ref|YP_001354768.1| allophanate hydrolase [Janthinobacterium sp. Marseille] Length = 598 Score = 542 bits (1397), Expect = e-155, Method: Compositional matrix adjust. Identities = 325/598 (54%), Positives = 396/598 (66%), Gaps = 16/598 (2%) Query: 15 TIAATLAAYREGRSTPGKVVAELLARIDRAGRDEVWISRVPPKQLKQQAAALDLMLQIKG 74 TI AYR+G +TP ++A LL + A D WI+ + L Q AL+ Sbjct: 5 TIVDWQTAYRDG-ATPAALLATLLDGL--ASDDAAWITLIDQPYLAAQLQALEARRLANP 61 Query: 75 EAVLETMPLFGIPFAVKDNIDVAEMSTTGACPEFGRLASESAAVVQRLQAAGALLVGKTN 134 + L T+PL+G+PFA KDNIDVA + TT ACPEF +A + A VVQRL AGA+++GKTN Sbjct: 62 D--LATLPLYGVPFAAKDNIDVAGIRTTAACPEFAYIAEQHATVVQRLLDAGAIVIGKTN 119 Query: 135 LDQFATGLVGVRSPYGAVRNAIKPDYVSGGSSSGSAVAVALGQVLFSLGTDTAGSGRVPA 194 LDQFATGLVG+RSPYGAV N+ P+YVSGGSSSGSA VA G V FSLGTDTAGSGRVPA Sbjct: 120 LDQFATGLVGIRSPYGAVPNSFDPEYVSGGSSSGSASVVARGLVPFSLGTDTAGSGRVPA 179 Query: 195 AFNHLVGLKPTKGLISARGLVPACRTLDCISIFAHDVADAWRVLHSAAGFDTEDGYSR-R 253 N++VGLKPT G +S RG+VPACRTLDC+SIFA VADA V AAGFD D YSR R Sbjct: 180 GLNNIVGLKPTVGSLSGRGVVPACRTLDCVSIFATTVADAELVFTQAAGFDAADAYSRAR 239 Query: 254 PTMLGVKRRGY-RIAIPEHCEFFGDSVAQEAWERSLAQIAALPGVSLAKIPFAPFSAAAQ 312 P + K R IP EF+GD++A A+ ++L + A V + + F+ F Sbjct: 240 PEHVLNKLPAKPRFGIPAQPEFYGDTIAAAAYAQALEAVRASGAVCI-PLDFSLFDQVTA 298 Query: 313 LLYQGPWVAERRAALGDFFLENQEAIHPVVRQITAQADDYDAVDSFNAQYRLADLRRQAE 372 LLY GPWVAER AA+ F E+ +AIHPVVR I +A ++ A D+FNAQY+LADL+R A+ Sbjct: 299 LLYDGPWVAERYAAIEAFAKEHGDAIHPVVRDIIFRAREFSATDTFNAQYKLADLKRAAD 358 Query: 373 NLLAGSDLMLVPTTTTFPTIAEVEADPVVRNAQLGHYTNFVNLMDMSALAIPGVWRRDGL 432 ++A D +LVPT T IA+V ADPV RN+ +G YTNFVNL++ ALA+P R DGL Sbjct: 359 KIMASVDALLVPTAPTHYKIADVAADPVRRNSHMGKYTNFVNLLNWCALAVPANLRSDGL 418 Query: 433 PAGVTLIGPAGADHLLAEAGACFQQQL----GGAAQADAIAAAPLPFNE---STIKVCVV 485 P G+TLIGPA +DH LA G +Q G Q A A NE ++V VV Sbjct: 419 PFGLTLIGPAWSDHALAAFGKQWQALTGLPRGATGQPYIPAVATQDQNEVPDGHLRVAVV 478 Query: 486 GAHLAGQPLNWQLLEAGARRVAVTCTAACYRLYALAGTTPPKPGLARTEGDGAAIAVEVW 545 GAHL G PLN +L E A V T TA YRLYALA T PPKPGLAR++ DGAAI VE+W Sbjct: 479 GAHLTGMPLNRELTERDAILVESTQTADSYRLYALAQTVPPKPGLARSK-DGAAITVELW 537 Query: 546 EMPLRQFGGFVAAIPAPLGIGTVELADGSSVKGFICEPAGIAGATDITHHGGWVNYLN 603 ++PL FG FVA +PAPLGIGT+EL+DG VKGFICEP + A DIT GGW Y N Sbjct: 538 DIPLPAFGSFVAGVPAPLGIGTLELSDGRLVKGFICEPYALESAQDITSFGGWRAYCN 595 >gi|152981287|ref|YP_001352460.1| amidase [Janthinobacterium sp. Marseille] Length = 408 Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 111/384 (28%), Positives = 167/384 (43%), Gaps = 26/384 (6%) Query: 83 LFGIPFAVKDNIDVAEMSTTGACPEF---GRLASESAAVVQRLQAAGALLVGKTNLDQFA 139 L G+ FAVKD D+A T P + A++ AA V+RL + GA VGKT D+ Sbjct: 42 LEGVRFAVKDVFDIAGTRTGAGNPVWLSGNPAANKHAAAVERLLSDGARFVGKTLTDELT 101 Query: 140 TGLVGVRSPYGAVRNAIKPDYVSGGSSSGSAVAVALGQVLFSLGTDTAGSGRVPAAFNHL 199 L G+ + YG RN PD + GGSSSGS AVA G +LGTD GS R+PA++ + Sbjct: 102 YSLAGINAHYGVPRNPASPDRLPGGSSSGSVAAVAAGLADIALGTDCGGSVRLPASYCGV 161 Query: 200 VGLKPTKGLISARGLVPACRTLDCISIFAHDVADAWRVLHSAAGFDTEDGYSRRPTMLGV 259 G++PT G +S G + + D + FA + + + A +T S T L + Sbjct: 162 WGMRPTHGRLSGHGCLTLAHSFDTVGWFADTLEHLEQTFCALAHAETT---SMPATFLTL 218 Query: 260 KRRGYRIAIPEHCEFFGDSVAQEAWERSLAQIAALPGVSLAKIPFAPFSAAAQLLYQGPW 319 G + + F S + LA + L S A F A+ + G W Sbjct: 219 NDSGIN-GLLDPAVFDAFSKLKNEQSDFLAVDSELELASWAA-AFRILQASEAWMEHGLW 276 Query: 320 VAERRAALGDFFLENQEAIHPVVRQITAQADDYDAVDSFNAQ-YRLADLRRQAENLLAGS 378 V + LG +RQ A A AQ R+A +R L + Sbjct: 277 VTQHADELG-----------VDIRQRFNIAAGVTATQVRTAQEVRIAAIRELNRILDSQH 325 Query: 379 DLMLVPTTTT---FPTIAEVEADPVVRNAQLGHYTNFVNLMDMSALAIPGVWRRDGLPAG 435 ++++PT T T D V +Q H L + L++P + + +G P G Sbjct: 326 KVIVLPTVPTPAPLLTADSATVDDVRMRSQ--HLLCIAGLAGLPQLSMPWI-QVNGAPVG 382 Query: 436 VTLIGPAGADHLLAEAGACFQQQL 459 +++IG G D ++ A Q ++ Sbjct: 383 LSIIGGRGCDEIVLHAAHKLQARI 406 >gi|152980171|ref|YP_001351884.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Janthinobacterium sp. Marseille] Length = 485 Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 71/209 (33%), Positives = 98/209 (46%), Gaps = 9/209 (4%) Query: 79 ETMPLFGIPFAVKDNIDVAEMSTTGACPEFGRLASE-SAAVVQRLQAAGALLVGKTNLDQ 137 +T L GIP A KD + +T S A VV++ + AG + +GK N D+ Sbjct: 62 DTTVLTGIPIAHKDIFVTRDWRSTAGSKMLENYVSPFDATVVEQFKQAGMVHLGKLNCDE 121 Query: 138 FATGLVGVRSPYGAVRNAIKPDYVSGGSSSGSAVAVALGQVLFSLGTDTAGSGRVPAAFN 197 FA G S +GAV+N + GGSS GSA A+A S TDT GS R PAA Sbjct: 122 FAMGSSNENSYFGAVKNPWDKAAIPGGSSGGSAAAIAARLTPASTATDTGGSIRQPAALC 181 Query: 198 HLVGLKPTKGLISARGLVPACRTLDCISIFAHDVADAWRVLHSAAGFDTEDGYSRRPTML 257 + G+KPT G +S G++ +LD A D +L++ GFD D S Sbjct: 182 GVTGIKPTYGSVSRFGMIAFASSLDQGGPIAKTAEDCGLLLNAMTGFDPRDSTSIERDKE 241 Query: 258 GVKR------RGYRIAIPEHCEFFGDSVA 280 R +G +I +P E+FG +A Sbjct: 242 DFTRDLNQPLQGLKIGLPR--EYFGAGLA 268 >gi|152981221|ref|YP_001352351.1| amidase [Janthinobacterium sp. Marseille] Length = 431 Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 72/181 (39%), Positives = 97/181 (53%), Gaps = 16/181 (8%) Query: 56 PKQLKQQAAALDLMLQIKGEAVLETMPLFGIPFAVKDNIDVAEMSTTGACPEFGRLAS-E 114 P+Q+ +QA LD A L+G+P VKD +D A+M TT P + Sbjct: 49 PQQVIEQARRLD--------AQPHQGLLYGLPIGVKDLMDTADMPTTYGSPIYENYRPLV 100 Query: 115 SAAVVQRLQAAGALLVGKTNLDQFATGLVG-VRSPYGAVRNAIKPDYVSGGSSSGSAVAV 173 AA V ++AGA+L+GKT +FAT G R+P+GA D+ GGSSSGSA AV Sbjct: 101 DAACVAASRSAGAVLMGKTVTTEFATFQPGPTRNPHGAT------DHTPGGSSSGSAAAV 154 Query: 174 ALGQVLFSLGTDTAGSGRVPAAFNHLVGLKPTKGLISARGLVPACRTLDCISIFAHDVAD 233 A G V + T TAGS PAA+ +VG KPT G + G+ +LD + + +VAD Sbjct: 155 ASGMVPAAFATQTAGSIVRPAAYCGVVGYKPTFGTLPLAGIKSLSPSLDTVGVLTRNVAD 214 Query: 234 A 234 A Sbjct: 215 A 215 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,381,009 Number of extensions: 57513 Number of successful extensions: 166 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 158 Number of HSP's successfully gapped: 4 Length of query: 606 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 517 Effective length of database: 891,988 Effective search space: 461157796 Effective search space used: 461157796 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)