BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1228.p
         (339 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981578|ref|YP_001354306.1| ABC-type nitrate/sulfonate/bica...    67   1e-12

>gi|152981578|ref|YP_001354306.1| ABC-type
           nitrate/sulfonate/bicarbonate transport systems,
           periplasmic component [Janthinobacterium sp. Marseille]
          Length = 332

 Score = 67.4 bits (163), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 120/276 (43%), Gaps = 41/276 (14%)

Query: 17  RRFMAKAGALTATAAITGAPAI-LRAQSVP--IRIGY---WPVAAGLPFYAAVEAGYFKQ 70
           RRF  K  AL   A ++ + ++   A + P  IR+ Y    P +  L  +  +E    K 
Sbjct: 3   RRFFIKNTALLTLAGLSTSVSLSAHAAAAPEEIRLDYAYYSPTSLVLKHFGWLEEQ-VKS 61

Query: 71  AGLEVQAIKFAGAQQVMEAMLSGRADGSANGTGAGNLAIGEIAQPGLFKIFAT---NPSN 127
           +G++V+     G+ + +E +       SAN    G+ A       GL  + +    NP  
Sbjct: 62  SGIKVKWTLSQGSNRALEYL-------SANSIDFGSTA-------GLAAVLSRANGNPIK 107

Query: 128 AKYVLDE-----FLVPQDSPVKSIADLKGKKVASGPGIQNVTLAKTVLERAG--ATSATV 180
           + YV         LVP+DSP+K++ADLKGKK+A+  G          L+  G   +   +
Sbjct: 108 SVYVYSRPEWTALLVPKDSPIKTVADLKGKKIAATKGTDPYLFLLRTLKVNGLKKSDVEI 167

Query: 181 VELPIGQHVASLAAGQVDAAYTLEPTGTVGRMSNSTRVLEAGVIAKYILGDPMAPWHGGA 240
           V L      A+L +G++DA   L+P      +   +R+L   V               G 
Sbjct: 168 VHLQHADGRAALESGRIDAWAGLDPHMASSELQAGSRLLYRNVAFNTY----------GF 217

Query: 241 AALTTEFIKKNPELARKYIAAYARGIELVRSKPDQA 276
             +T +F KK PE  ++ + AY R    + + P +A
Sbjct: 218 LNVTEDFAKKYPEQVKQVLQAYERARLWILANPREA 253


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 734,650
Number of extensions: 30855
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 255
Effective length of database: 910,473
Effective search space: 232170615
Effective search space used: 232170615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)