BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1227.p (278 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bica... 105 3e-24 gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport sys... 104 6e-24 gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bica... 80 2e-16 gi|152981495|ref|YP_001352171.1| ABC-type nitrate transport syst... 63 2e-11 >gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 296 Score = 105 bits (262), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 80/267 (29%), Positives = 135/267 (50%), Gaps = 6/267 (2%) Query: 10 AVAPQPATAAPASAAPRKCAALGRLLPIVGPIVLFVIWDLVVRAGWIKAILLPPPEATLM 69 AV TAA A RK LG +LP+ ++ FV ++ + GWI+A LLPPP + Sbjct: 28 AVKDVATTAAEPVAKARKLGWLGWILPLA--VLGFV--EVAAQLGWIQARLLPPPSEIVQ 83 Query: 70 AMFKGLAGGPLLLDFSVTVVRTLEAFAIAAVLGLPIGVLLGSNERAYRSVEFLIDFFRST 129 + L G LL+ S +V R +AI AVL + G+ +G ++ A E R+ Sbjct: 84 TLSALLEQG-LLVHISASVARVFSGYAIGAVLAILFGLFVGLSKHAEAFFEPTFQALRAI 142 Query: 130 PSSALIPLFLLIFGVSDINKVAIAAFGAFLIVLFNSAYGVLNARKQRVMAAKVMGASRWR 189 PS A +PL LL FG+ + K+ + A GAF + G+ N ++ + ++ G S Sbjct: 143 PSLAWVPLLLLWFGIDETPKITLIAIGAFFPIYLGLVSGIRNVDRKLIELGEIYGLSAPA 202 Query: 190 IFCDVLIWESLQASFVGLRSAVSMALVIVIVAEMFIGSENGLGHRIIDTQQVLNVREMYA 249 + +++ +L + F GLR+ +S+A + ++ AE+ I + G+G+ + D ++ + A Sbjct: 203 LARRIVLPAALPSLFTGLRNGLSLAWMFLVAAEL-IAATKGIGYLLTDGRETSRPDVVLA 261 Query: 250 AILSAGALGYALNVVFIVIEKRIVHWS 276 AI LG + + +E R + WS Sbjct: 262 AIFLLAILGKLTDGLLKWLETRKLAWS 288 >gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport system permease protein [Janthinobacterium sp. Marseille] Length = 276 Score = 104 bits (259), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 72/249 (28%), Positives = 136/249 (54%), Gaps = 1/249 (0%) Query: 27 KCAALGRLLPIVGPIVLFVIWDLVVRAGWIKAILLPPPEATLMAMFKGLAGGPLLLDFSV 86 + + L +L+P + P++L +W + + GW+ + +LP P A A ++ G L V Sbjct: 23 RASGLKKLVPWIVPVLLISVWQIASQLGWLSSRILPEPFAVAKAAWELALSGELWTHVKV 82 Query: 87 TVVRTLEAFAIAAVLGLPIGVLLGSNERAYRSVEFLIDFFRSTPSSALIPLFLLIFGVSD 146 ++ R +FA+ LGL +G+L G+ + A ++ + R+ P+ ALIPL +L FG+ + Sbjct: 83 SLWRATTSFAVGGGLGLLLGLLTGTFKTAETLLDTTLQMIRNIPALALIPLVILWFGIEE 142 Query: 147 INKVAIAAFGAFLIVLFNSAYGVLNARKQRVMAAKVMGASRWRIFCDVLIWESLQASFVG 206 +K+ + A G F V N+ +G+ + K + AK G S W ++ DV++ +L + VG Sbjct: 143 TSKIFLVAVGVFFPVYLNTFHGIRSVDKGLIEMAKSYGLSGWSLYRDVILPGALPSILVG 202 Query: 207 LRSAVSMALVIVIVAEMFIGSENGLGHRIIDTQQVLNVREMYAAILSAGALGYALNVVFI 266 +R ++ + V++IVAE I +++G+G+ ++ ++ L + IL LG +VV Sbjct: 203 VRFSLGLVWVLLIVAET-ISAQSGIGYMTMNAREFLQTDVVLVGILLYALLGKLADVVSR 261 Query: 267 VIEKRIVHW 275 +E + W Sbjct: 262 TLEGYWLRW 270 >gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 276 Score = 79.7 bits (195), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 116/238 (48%), Gaps = 11/238 (4%) Query: 47 WDLVVRAGWIKAILLPPPEATLMAMFKGLAGGPLLLDFSVT--------VVRTLEAFAIA 98 W + V+A + L+P P+ + ++ GG FS T V R F A Sbjct: 37 WHVGVKASGTQ--LIPLPKDVGLMLYDFAFGGIYDDAFSETLPLHLWKSVTRVYGGFFAA 94 Query: 99 AVLGLPIGVLLGSNERAYRSVEFLIDFFRSTPSSALIPLFLLIFGVSDINKVAIAAFGAF 158 A++G+P+G+L+G + ++ + R P +A +PL ++ FG+ + + GAF Sbjct: 95 ALVGIPLGLLIGRIKVIRDLLDPTLQLLRPVPVTAWLPLSMIFFGIGPNAAIFLVFLGAF 154 Query: 159 LIVLFNSAYGVLNARKQRVMAAKVMGASRWRIFCDVLIWESLQASFVGLRSAVSMALVIV 218 ++FN+ +GV + AA ++G + +F V++ ++ + GLR A +++ Sbjct: 155 YPIVFNTTFGVKAVDNRLFEAALMLGCNGSSLFRQVVLPAAMPSILNGLRLGHGFAWILI 214 Query: 219 IVAEMFIGSENGLGHRIIDTQQVLNVREMYAAILSAGALGYALNVVFIVIEKRIVHWS 276 +V EM G GLG I+D + + + A ++ G +GY+ + + + I ++ WS Sbjct: 215 VVGEM-TGVPEGLGAVIMDGRMLSRTDLVIAGMVVIGIVGYSTDRILVAINNYLLKWS 271 >gi|152981495|ref|YP_001352171.1| ABC-type nitrate transport system, permease component [Janthinobacterium sp. Marseille] Length = 309 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 126/288 (43%), Gaps = 23/288 (7%) Query: 2 NETIAPAVAVAPQPATAAPASAAPRKCAALGR------LLPIVGPIVLFVIWDLVVRAGW 55 +E PA A A A PA A K R L PI G + L ++W+++ Sbjct: 25 SEVAGPADAAV---AKATPAVAPKVKAKWSSRPFLLAVLPPIFGMVFLILVWEIISA--- 78 Query: 56 IKAILLPPPEATLM---AMFKG--LAGGPLLLDFSVTVVRTLE----AFAIAAVLGLPIG 106 K+ +P P T A+F + GP ++ +L+ F +AA++G+P+G Sbjct: 79 -KSSGIPSPLVTFQSAQALFADPFYSNGPNDQGIGWNILASLKRVGMGFGMAALVGIPLG 137 Query: 107 VLLGSNERAYRSVEFLIDFFRSTPSSALIPLFLLIFGVSDINKVAIAAFGAFLIVLFNSA 166 ++G + +I + A +P+ LL+F +D + + ++ N+A Sbjct: 138 FMIGRFKFLSGMFNPIISLLKPVSPLAWLPIGLLVFKAADPAAIWSIFICSIWPMIINTA 197 Query: 167 YGVLNARKQRVMAAKVMGASRWRIFCDVLIWESLQASFVGLRSAVSMALVIVIVAEMFIG 226 GV + + AKV+ S W+I +L L G+R A+ A ++++ AEM G Sbjct: 198 VGVQRVPQDYMNVAKVLKLSEWKIVTKILFPSVLPYMLTGVRLAIGTAWLVIVAAEMLTG 257 Query: 227 SENGLGHRIIDTQQVLNVREMYAAILSAGALGYALNVVFIVIEKRIVH 274 G+G + D LNV + AI+ G +G L + + I + + Sbjct: 258 GV-GIGFWVWDEWNNLNVPHIIIAIVVIGVVGLILEQILVGIARAFTY 304 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.141 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 567,955 Number of extensions: 22354 Number of successful extensions: 133 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 6 Length of query: 278 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 196 Effective length of database: 917,867 Effective search space: 179901932 Effective search space used: 179901932 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)