BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1226.p (285 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 154 5e-39 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 149 2e-37 gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-bi... 145 2e-36 gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport sy... 141 5e-35 gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bica... 129 2e-31 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 154 bits (390), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 87/208 (41%), Positives = 124/208 (59%), Gaps = 7/208 (3%) Query: 26 ITIRGLTKYFAGWPLYENFDLDIPKQQIVSVFGPNGCGKSTLINMIAGLIPIDAGQILFD 85 + IR LT+ F + +N L I + ++ GP+GCGK+TL+ MIAG DAGQIL D Sbjct: 4 LEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQILLD 63 Query: 86 GKSLA-----QTKIGYVFQNYRDALFPWLRTIDNIAYPLKLEGKSKAEIKHRVDELVASF 140 G L Q + VFQNY ALFP + NIA+PL++ KAEI+ +VDE + Sbjct: 64 GVDLTGVPPEQRPVRTVFQNY--ALFPHMTVGGNIAFPLEMANTPKAEIQKKVDEALEDV 121 Query: 141 DVKFDLMRYPYELSGGQQQTASIMRALAPGPEVLFLDEPFSALDFEMTLFIREKLQQVFL 200 + RYP+ELSGGQ+Q SI RAL P++L LDEP SALD ++ ++ +L + Sbjct: 122 RLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQK 181 Query: 201 QTGTTMVLVSHDLEEAVYLADQILLLTK 228 + G T + V+HD EA+ L+ +I ++ K Sbjct: 182 EVGITFIYVTHDQAEALALSHRIAVMNK 209 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 149 bits (376), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 81/212 (38%), Positives = 130/212 (61%), Gaps = 11/212 (5%) Query: 26 ITIRGLTKYFAGWPLYENFDLDIPKQQIVSVFGPNGCGKSTLINMIAGLIPIDAGQILFD 85 I ++ + K F + N LD P ++ ++ GP+GCGK+TL+ +IAGL D GQ+L D Sbjct: 3 IEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 86 G-----KSLAQTKIGYVFQNYRDALFPWLRTIDNIAYPLKLEGK----SKAEIKHRVDEL 136 G + + + ++G+VFQ+Y ALF + +NIA+ L++ S+++IK +V +L Sbjct: 63 GEDASARHVRERQVGFVFQHY--ALFKHMTVFENIAFGLRVRPAATRPSESQIKEKVTKL 120 Query: 137 VASFDVKFDLMRYPYELSGGQQQTASIMRALAPGPEVLFLDEPFSALDFEMTLFIREKLQ 196 + + + RYP +LSGGQ+Q ++ RALA P VL LDEPF ALD ++ +R L+ Sbjct: 121 LELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLR 180 Query: 197 QVFLQTGTTMVLVSHDLEEAVYLADQILLLTK 228 ++ T + V+HD EEA+ +ADQI+L+ K Sbjct: 181 RLHDDLHVTSIFVTHDQEEALEVADQIVLMNK 212 >gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 268 Score = 145 bits (367), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 80/216 (37%), Positives = 130/216 (60%), Gaps = 8/216 (3%) Query: 43 NFDLDIPKQQIVSVFGPNGCGKSTLINMIAGLIPIDAGQILFDGKSLA--QTKIGYVFQN 100 N +L + K + +++ G +GCGKSTL+N+IAGL G +L + +A + VFQN Sbjct: 30 NVNLTVSKGEFITLIGHSGCGKSTLLNLIAGLTQATGGMLLCGNREIAGPSPERAVVFQN 89 Query: 101 YRDALFPWLRTIDNIAYPLKL---EGKSKAEIKHRVDELVASFDVKFDLMRYPYELSGGQ 157 + +L PWL +N+ ++ +SKAE+K R +A + + P E+SGG Sbjct: 90 H--SLLPWLTCYENVYLAVERVFSATESKAELKARTRAALALVGLSHAEQKRPNEISGGM 147 Query: 158 QQTASIMRALAPGPEVLFLDEPFSALDFEMTLFIREKLQQVFLQTGTTMVLVSHDLEEAV 217 +Q I RAL+ P+VL +DEPF ALD ++++L ++ TG+T+V+V+HD++EAV Sbjct: 148 KQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELLKIVAATGSTVVMVTHDVDEAV 207 Query: 218 YLADQILLLTKRPTA-VADILHYQDRRPRTVETLSQ 252 L+D+I++LT P+A + +IL + RPR L+Q Sbjct: 208 LLSDRIVMLTNGPSATIGEILEVKLARPRERVMLAQ 243 >gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 363 Score = 141 bits (355), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 83/232 (35%), Positives = 129/232 (55%), Gaps = 24/232 (10%) Query: 1 MSVVISPKVDLPLETPFVPGPPGTHITIRGLTKYFAGWPLYENFDLDIPKQQIVSVFGPN 60 MS + +P L LET V G+H+ + + + + +I + G + Sbjct: 1 MSAIPTPSAHLQLETIRVGYQLGSHM-----------HEIVHSLSFALQRGEIGCLLGQS 49 Query: 61 GCGKSTLINMIAGLIPIDAGQILFDGKSLAQTK---------IGYVFQNYRDALFPWLRT 111 GCGK+T++ IAG + AG+I GK L+ + +G VFQ+Y ALFP L Sbjct: 50 GCGKTTVLRAIAGFESLIAGRITLGGKELSNAQHTTVPEARHVGVVFQDY--ALFPHLSV 107 Query: 112 IDNIAYPLKLEGKSKAEIKHRVDELVASFDVKFDLMRYPYELSGGQQQTASIMRALAPGP 171 DNI + L+ + AE R+++L+A ++ ++P+ELSGGQQQ ++ RALAP P Sbjct: 108 SDNIGFGLR--KLAAAERNGRINKLLALVGLQAQEKKFPHELSGGQQQRVALARALAPQP 165 Query: 172 EVLFLDEPFSALDFEMTLFIREKLQQVFLQTGTTMVLVSHDLEEAVYLADQI 223 ++L LDEPFS LD ++ + +++ + + GTT VLV+HD EA +ADQI Sbjct: 166 DLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVLVTHDQHEAFAIADQI 217 >gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 433 Score = 129 bits (324), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 129/231 (55%), Gaps = 12/231 (5%) Query: 26 ITIRGLTKYFA---GWP--LYENFDLDIPKQQIVSVFGPNGCGKSTLINMIAGLIPIDAG 80 I ++G+ K F G P + E D + + +IV++ G +G GKSTL+ ++AGLIP D+G Sbjct: 7 IELKGVDKSFQTADGTPSSVLEQVDFTLTEGEIVALLGKSGSGKSTLLRIMAGLIPADSG 66 Query: 81 QILFDGKSLAQ--TKIGYVFQNYRDALFPWLRTIDNIAYPLKLEGKSKAEIKHRVDELVA 138 ++ GK++ I VFQ++ ALFPWL N+ L+ +G AE + R D ++ Sbjct: 67 SAMYRGKNIYGPVAGIAMVFQSF--ALFPWLTVQQNVELGLEAQGVPPAEREKRADAMLD 124 Query: 139 SFDVKFDLMRYPYELSGGQQQTASIMRALAPGPEVLFLDEPFSALDFEMTLFIREKLQQV 198 + P ELSGG +Q I R L GP+VL +DE FSALD +R+ + ++ Sbjct: 125 LIGLAGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILEM 184 Query: 199 FLQT---GTTMVLVSHDLEEAVYLADQILLLTKRPTAVADILHYQDRRPRT 246 + + +++VSH++EEAV ++D+I++L+ P + + RPR Sbjct: 185 WEENRIPTKGILIVSHNIEEAVMMSDRIVVLSSSPGRIRSEIKIDLPRPRN 235 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 663,122 Number of extensions: 26818 Number of successful extensions: 276 Number of sequences better than 1.0e-08: 55 Number of HSP's gapped: 205 Number of HSP's successfully gapped: 57 Length of query: 285 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 203 Effective length of database: 917,867 Effective search space: 186327001 Effective search space used: 186327001 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)