BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1225.p
         (365 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981085|ref|YP_001353362.1| ABC-type transport system, peri...   196   1e-51
gi|152981540|ref|YP_001355255.1| ABC-type transport system, peri...    70   2e-13

>gi|152981085|ref|YP_001353362.1| ABC-type transport system,
           periplasmic component/surface lipoprotein
           [Janthinobacterium sp. Marseille]
          Length = 366

 Score =  196 bits (499), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/368 (33%), Positives = 186/368 (50%), Gaps = 14/368 (3%)

Query: 3   NRRDFLKLSGAAALGAAF---PLELLAAGPLTVGFIYVGARDDFGYNQSHAQAAAVIKK- 58
            RRDFLK   A  L  A     ++  A   L V   YV    D G+ + H  A   ++  
Sbjct: 5   TRRDFLKQLSALGLTTAIGGRAMDAFADEVLKVAVAYVSPIGDVGWTKQHDLARQAMEAA 64

Query: 59  LPG-VKVIEEEKVPETVAVQKTMEAMIQQDGATLLFPTSFGYFDPHVLKIAEKYPKVRIA 117
            PG +KV++ E V +    ++    +  Q G  L+F TSF +  P +LK+A+  PK    
Sbjct: 65  FPGKIKVVKVEGVSQAQDAERVFRDLAVQ-GNKLIFGTSFSHMTP-MLKVAQSMPKTTFE 122

Query: 118 HCGGLWTAGKHPMNVGSFFGYIEECEYLSGVVAGYMSKSKKLAFIAAKPIPQVLRNINAF 177
            C G+    K   N+G+F     E  YL+G+VAG MSKS  L FI   P+P +L   NAF
Sbjct: 123 LCSGI----KTLKNMGAFEARYYEGTYLAGIVAGKMSKSNVLGFIGGFPVPDILGPANAF 178

Query: 178 TLGAQSVDPSITCHVIFTGDWSLPVKEAEAANSLIDQGCDVITCHVDGPKVIVETAEKRG 237
            LGA+SV+P +TC VI+   W  P KE +AAN+LI +G DV++   D P  I +  E++G
Sbjct: 179 LLGARSVNPKVTCKVIWLSSWYDPAKERDAANALISEGADVVSSMTDTPTTI-QVGEEKG 237

Query: 238 IMTTGYHASQAALAPKGYLTGAEWNWATPYTAIVKATLEGKPMINFLRGGLKDDFVKMSP 297
           + T GY +  +   PK +LT    +W + Y    ++ ++G    +    GLK   VKM P
Sbjct: 238 VWTVGYASDMSKYGPKKHLTSFIVDWRSEYINAARSVMDGTWKSSHRWDGLKSGVVKMGP 297

Query: 298 YGAAVSAPAKKKADEIKAQMLAGKFQIFKGPIKDNKGNTVIPAGTTQVQTDVVLEKMNYL 357
           Y  A+         + +  ++AG    F GP++D  G   + AG+     D  L+ +N+ 
Sbjct: 298 YNPAIPKDVLTYVAQQEQAIIAGTLHPFAGPLRDQSGKERVAAGS--ALPDDQLKSINWF 355

Query: 358 VAGVVGQV 365
           V G+ G +
Sbjct: 356 VEGMQGNL 363


>gi|152981540|ref|YP_001355255.1| ABC-type transport system,
           periplasmic component/surface lipoprotein
           [Janthinobacterium sp. Marseille]
          Length = 329

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 9/220 (4%)

Query: 3   NRRDFLKL----SGAAALGAAFPLELLAAGPLTVGFIYVGARDDFGYNQSHAQAAAVIKK 58
           +RR FLK     +GA  L        +AA P+ +G +  G++ D G+ +S        + 
Sbjct: 4   SRRTFLKTVATSAGAGTLAYGLAPFAMAADPIKIGILMPGSKLDHGWMESAYNGIKRAEA 63

Query: 59  LPGVKVIEEEKVPETVAVQKTMEAMIQQDGATLLFPTSFGYFDPHVLKIAEKYPKVRIAH 118
             G KV  +    E V      + ++       L   + G     VLK+A+++PKV+ + 
Sbjct: 64  RYGSKV--KISFIENVKFGDMEQVLVSLASKNDLVIGAAGQTQASVLKVAQRFPKVKFSI 121

Query: 119 CGGLWTAGKHPMNVGSFFGYIEECEYLSGVVAGYMSKSKKLAFIAAKPIPQVLRNINAFT 178
            G     G    NV  +     +  +++G VA   SK+  ++++    IP ++     F 
Sbjct: 122 VG---PTGTPTSNVAQYDVLQAQIGFIAGAVAAMSSKNGAVSYVGGAEIPAIVNTGKEFG 178

Query: 179 LGAQSVDPSITCHVIFTGDWSLPVKEAEAANSLIDQGCDV 218
            GA+ V P I     +TGD+    K  EA  + I QG DV
Sbjct: 179 NGARYVKPDIKYFETYTGDFDDVTKAKEATLAAIGQGADV 218


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 815,251
Number of extensions: 33682
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 2
Length of query: 365
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 281
Effective length of database: 910,473
Effective search space: 255842913
Effective search space used: 255842913
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)