BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1224.p
         (389 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980963|ref|YP_001353368.1| transmembrane ABC transporter p...   139   3e-34
gi|152981332|ref|YP_001355253.1| ABC-type uncharacterized transp...    92   6e-20

>gi|152980963|ref|YP_001353368.1| transmembrane ABC transporter
           protein [Janthinobacterium sp. Marseille]
          Length = 364

 Score =  139 bits (350), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 165/343 (48%), Gaps = 10/343 (2%)

Query: 38  PTLCALAGTLLLFVLFLLVQGKP-AGEACLLIFQGAFGTTFAWQNTLQRAAPLLLTALCV 96
           P L  L   L   VLF L+   P AG A  + F         W     + APLL+ +  +
Sbjct: 19  PVLAVLLTALCGAVLFALLGKDPLAGLA--VFFLEPLKDLHGWSEVGVKVAPLLMISAGL 76

Query: 97  ALPARVGLIVIGGEGALALGGLAAAVMPQLLPVLPS--LVMLVVMALAAMLAGGLWIALC 154
           A+  R  +  IG EG L  G +A   +            +M+ V+ +A ML G  W A+ 
Sbjct: 77  AICFRANVFNIGAEGQLVFGAIAGGAVGLYFDKGSGGGPLMITVVLIAGMLGGMAWAAIT 136

Query: 155 GGLRQWRGVNETISSLLLSYLAVAVFKHLVEGPLRDPASLNKPSTLPLPDAYLVGS-LPG 213
             LR     +E + SL+L Y+A  +  +LV+G  +DP   N P +    + +++   + G
Sbjct: 137 AFLRDRFNASEILVSLMLVYVAQLLLSYLVQGVFKDPDGFNFPQSRMFSEGFVLPIIMEG 196

Query: 214 MEVHWGLVWGALACLAAWVLLRHSVLGFAMGVVGGNVRTARLVGLPVNRLILTACTLGGA 273
             +H G+V   +A  AAW+ L  S  GF +   G   R A   G    + + T+  + GA
Sbjct: 197 TRLHLGIVLALIAAFAAWLFLSKSYAGFRLQTGGMAPRAALYAGFSSRKALWTSLMICGA 256

Query: 274 AAGLAGMFEVSAVQGSATSALLAGYGFSGILVAFAARQNPLAIIVCAIVIGGVEASGSLL 333
            +GLAG+ EV    G  T ++  GYGF+ I+VA+  R NP+ +I  + ++      G L 
Sbjct: 257 LSGLAGVCEVLGPIGQLTPSVSPGYGFAAIIVAYVGRLNPIGVIFSSFIMALFYIGGELS 316

Query: 334 QRRLDLPDATTLVLQGLLFCNLLAWEAITGRLAALKLRWQTQA 376
           Q RL +P+A T V QG+L  +LLA +     L   KLRW + +
Sbjct: 317 QSRLGIPNAITGVFQGILLFSLLACDV----LINYKLRWDSSS 355


>gi|152981332|ref|YP_001355253.1| ABC-type uncharacterized transport
           system, permease component [Janthinobacterium sp.
           Marseille]
          Length = 365

 Score = 92.0 bits (227), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 159/330 (48%), Gaps = 17/330 (5%)

Query: 33  VAPAVPTLCALAGTLLLFVLFLLVQGKPAGEACLLIFQGAFGTTFAWQNTLQRAAPLLLT 92
           + P + T+ AL    LL V  +        EA    + G  G+ +    ++ R+  L L 
Sbjct: 26  IVPVLATVVAL----LLGVALIACTDSSVSEAIEAFWDGMVGSEYNIGASINRSISLGLV 81

Query: 93  ALCVALPARVGLIVIGGEGALALGGLAAAVMP-QLLPVLPSLVMLVVMALAAMLAGGLWI 151
            L      R  L  +GGEG +A+GG+ A  M       LP  +  ++  LA  L G LW 
Sbjct: 82  GLGFIFANRANLTNVGGEGQIAIGGMLATAMALHGAGNLPFGLAFILPMLAGTLGGALWG 141

Query: 152 ALCGGLRQWRGVNETISSLLLSYLAVAVFK------HLVEGPLRDPASLNKPSTLPLPDA 205
            L G L+ WRG+NE IS+LLL+++A+ +        HL+  P+   ++L  P ++ +PDA
Sbjct: 142 GLAGALKSWRGINEVISTLLLTFIALPLVYWSVESVHLLRKPMTQVSAL--PESMIIPDA 199

Query: 206 ----YLVGSLPGMEVHWGLVWGALACLAAWVLLRHSVLGFAMGVVGGNVRTARLVGLPVN 261
                L  S P   +H GL+   +A +A  ++L  +  G  +  VG N   +R  G+   
Sbjct: 200 TKLPMLFPSNPMSPLHIGLILAVIAVIAVGIVLSRTPFGLKLRAVGLNQMASRRAGMRSG 259

Query: 262 RLILTACTLGGAAAGLAGMFEVSAVQGSATSALLAGYGFSGILVAFAARQNPLAIIVCAI 321
            L++ A  + G   GLAG   +   Q   TS   +GYGF G++V   +R +   ++V A+
Sbjct: 260 FLVVLAMAIAGGFGGLAGAIMIQGQQYYLTSDFSSGYGFDGLVVGLLSRGSAWGVVVGAL 319

Query: 322 VIGGVEASGSLLQRRLDLPDATTLVLQGLL 351
           + G + +    ++    +P A  L+ QGL+
Sbjct: 320 LFGFLRSGSIAMEIMAHVPAAVVLISQGLI 349


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 686,718
Number of extensions: 23560
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 2
Length of query: 389
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 304
Effective length of database: 906,776
Effective search space: 275659904
Effective search space used: 275659904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)