BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1223.p
         (306 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980944|ref|YP_001353369.1| ABC-type transport system, perm...   144   9e-36
gi|152980940|ref|YP_001355252.1| ABC-type transport system, perm...   102   2e-23

>gi|152980944|ref|YP_001353369.1| ABC-type transport system,
           permease component [Janthinobacterium sp. Marseille]
          Length = 305

 Score =  144 bits (362), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 100/283 (35%), Positives = 155/283 (54%), Gaps = 10/283 (3%)

Query: 13  LFAGAIRVGTPFLFVSLGECLTEKGGRVNLGLEGILVCGAMTGYAASFYTGSAWLGVLAA 72
           L A +I  GTP L  +LG  + EK G VNLG EG+++  A+ G+A + +TGS  +G++A 
Sbjct: 7   LIAASINAGTPLLLAALGLLINEKSGVVNLGTEGMMLVAAIVGFATTVHTGSVTVGLMAG 66

Query: 73  GCSGLLLGVLHGVVCSLPRVNDIAFGIALMLLGTGLAFFLGKPFI----QPQAAMLPAI- 127
             SG+LL  L   +      N +A G+AL L GTG++ ++G  ++    Q     +P + 
Sbjct: 67  AGSGILLAALFAWLTVWLGANQVATGLALSLFGTGVSAYIGINYVSKTLQNSKFSIPLLQ 126

Query: 128 DLGAWSSNERLHHALQINALFFLGVALALLLQWGLAATRWGLALRLVGDHAETARALGYH 187
           D+  + +     H +      +  + L  L+ W L  +R GL LR VG+   +A +LGY+
Sbjct: 127 DIPFFGTALFRQHPM-----VYFSMLLCALIVWFLYRSRAGLVLRAVGESPSSAHSLGYN 181

Query: 188 LTGIRIAATAAGGFLAAVGGAYLSLYYPGSWNEGLSSGQGLMAVALVIFARWQPWRCLLA 247
           +  IR AA   GG    + GA+LSL Y   W EG+ +G+G +A+ALV FA W+P R L  
Sbjct: 182 VRLIRSAAVLFGGACCGLAGAFLSLVYTSQWLEGMVAGRGWIALALVTFASWRPARILAG 241

Query: 248 ALLFGAAGALGPALQAVGVTSGYYLFNAAPYALTLLIMILTCR 290
           A LF +   L   +Q+ GV     L +  PY  T+++++L  R
Sbjct: 242 AYLFSSVTILTFYMQSKGVPVASQLLSMLPYIATIVVLVLISR 284


>gi|152980940|ref|YP_001355252.1| ABC-type transport system,
           permease component [Janthinobacterium sp. Marseille]
          Length = 307

 Score =  102 bits (255), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 129/253 (50%), Gaps = 6/253 (2%)

Query: 11  LALFAGA-IRVGTPFLFVSLGECLTEKGGRVNLGLEGILVCGAMTGYAASFYTGSAWLGV 69
           LA+F G+ +R+  P +   +GE ++++ G +NL L+G+++  A     AS+ TGS  +GV
Sbjct: 6   LAVFLGSGLRLAMPIILAGMGELVSQRAGVLNLSLDGMMLTAAFAAAWASWVTGSPVIGV 65

Query: 70  LAAGCSGLLLGVLHGVVCSLPRVNDIAFGIALMLLGTGLAFFLGKPFIQP-QAAMLP--- 125
           L    + L++     ++    R N +  GI   +L  G   FL +    P     +P   
Sbjct: 66  LVGVMACLIVAFFQAILSVTLRANQLVVGIGFNILALGATTFLYREIFGPLSRDTIPGFA 125

Query: 126 AIDLGAWSSNERLHHAL-QINALFFLGVALALLLQWGLAATRWGLALRLVGDHAETARAL 184
            + +   S    +  AL Q   L ++G+ + ++    L  T +GLA+R VG+    A   
Sbjct: 126 KLHIPGLSEIPVIGPALFQQTGLAYIGLIMVVVTWAMLKYTSFGLAVRAVGEDPRAADKA 185

Query: 185 GYHLTGIRIAATAAGGFLAAVGGAYLSLYYPGSWNEGLSSGQGLMAVALVIFARWQPWRC 244
           G ++  IR       G LA +GGA++S+    ++ EG++ G G +A+  VIF  W PW+ 
Sbjct: 186 GINVKLIRYLGVLYAGTLAGLGGAFMSIADSNTFTEGMTRGAGYLAITAVIFGGWAPWKT 245

Query: 245 LLAALLFGAAGAL 257
           L A LLFG A AL
Sbjct: 246 LGACLLFGFATAL 258


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.142    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 549,867
Number of extensions: 16697
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 4
Length of query: 306
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 223
Effective length of database: 914,170
Effective search space: 203859910
Effective search space used: 203859910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)