BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1222.p
         (231 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981703|ref|YP_001355251.1| isochorismatase hydrolase [Jant...   130   5e-32

>gi|152981703|ref|YP_001355251.1| isochorismatase hydrolase
           [Janthinobacterium sp. Marseille]
          Length = 272

 Score =  130 bits (328), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 121/229 (52%), Gaps = 13/229 (5%)

Query: 2   SALYIQAEPYPWPYDGALTPANTALIVIDMQTDFCGIGGYVDKMGYDLSLTRAPIEPIKT 61
           + + IQ++P    +D       TAL+VIDMQ DFC   G+VD +G D +  R PIEP+K 
Sbjct: 47  APITIQSDPQTVTFDAH----RTALVVIDMQNDFCAKDGWVDHLGVDYTPCRQPIEPLKK 102

Query: 62  VLAAMRAGGYTIIHTREGHRPDLSDLPANKRWRSRQIGTDGVGIGDAGPCGRILVRGEPG 121
           +L  +R     II    G+RPDL ++P N+    +  G+ G+G+G+  P     V  +  
Sbjct: 103 LLPVLRDANVPIIWVNWGNRPDLLNMPPNQHHLYKPKGS-GIGLGEQLPKRVANVLEKDS 161

Query: 122 W--EIIPELAPIAGEIIIDKPGKGSFCATDLEMILHTRGIRNIVLTGITTDVCVHTTMRE 179
           W   ++ EL     +I +DK     F  T L+ IL    I+ ++  G+ TD CV  ++++
Sbjct: 162 WAAAVVDELEIHPQDICVDKYRISGFWDTPLDSILRNMDIKTLMFAGVNTDQCVLCSLQD 221

Query: 180 ANDRGFECVMLSDCCGAT--DYSNHLAALSMIKMQGGVFGAVSDSAALI 226
           AN  G+ CVM+ DCC  T  ++    A  ++ K     FG VS+S  +I
Sbjct: 222 ANFLGYACVMVEDCCATTSPEFCTQNAVFNVKK----CFGFVSNSDKII 266


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.140    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 589,548
Number of extensions: 25729
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 151
Effective length of database: 925,261
Effective search space: 139714411
Effective search space used: 139714411
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)