BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1221.p (522 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981231|ref|YP_001353367.1| ABC-type transport systems, ATP... 270 1e-73 gi|152981256|ref|YP_001355254.1| ABC-type uncharacterized transp... 256 2e-69 gi|152981020|ref|YP_001352897.1| ABC-type uncharacterized transp... 110 3e-25 gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type tr... 108 1e-24 gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 105 1e-23 >gi|152981231|ref|YP_001353367.1| ABC-type transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 511 Score = 270 bits (690), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 184/509 (36%), Positives = 285/509 (55%), Gaps = 21/509 (4%) Query: 6 LEILNAGKSFGSFRALDEVSLKVRAGTIHALLGENGAGKSTLVKGLVGYSPLDQGSILAD 65 LE+ + K + S A D ++L V+ G IHA+LGENGAGKSTL+K + G D G +L + Sbjct: 5 LELHSITKRYPSVVANDGINLSVKPGEIHAVLGENGAGKSTLMKIIYGSVKPDAGKVLWN 64 Query: 66 RREVDIRSARLPHQLGIGMVYQHFTLAPSLTVAENLLLARGDLPWRIRWGSERAVLEEFM 125 +EV I + + +LGI MV+QHF+L +LTV EN+ L LP + + + Sbjct: 65 GKEVHIANPAMARELGIAMVFQHFSLFDTLTVVENIALG---LPHDTKLDELARRISDTA 121 Query: 126 ARMPFKLATERLVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEADEVLGLMHA 185 + +L +R V +LS GE Q++EI++ L + + LILDEPTSVLTPQ +++ + Sbjct: 122 EQYGLELEPQRHVHTLSVGECQRVEIVRALLAKPQLLILDEPTSVLTPQAVEKLFETLRK 181 Query: 186 LTRQQELTVLMITHKFNEVSAYADDVTVLRKGRLVASAKVAETSPDALAHWMMGHAREEK 245 L + ++L I+HK +E+ A D TV+R G+ E S +L+ M+G Sbjct: 182 LA-AEGCSILYISHKLDEIRALCDTCTVVRAGKNTGICDPREESAASLSRMMIGCEPPPI 240 Query: 246 LAVARAAVPPQAAIGLEVKDLTVNNDRGVAA-VRALSLQVKHGEIVGLAGISGNGQKELV 304 V R+ P Q L VK+L++ + A + ++ +++ GEI+G+AG+SGNGQ+EL+ Sbjct: 241 KHVLRS--PGQTL--LAVKNLSLKKNHPFATELSDINFELRAGEILGIAGVSGNGQQELL 296 Query: 305 EALLGQRRHLLGQ-IRVEGAPYAATREEMRRLRVFAL-PEEPLRNACIPGMSVAENMALR 362 AL G+ Q I ++G RR R PEE L +P MS+A+N+ L Sbjct: 297 AALSGEDPRAEAQMILLQGERVGHFNPAQRRERGLGFVPEERLGRGAVPDMSLADNILLS 356 Query: 363 HFDVAPFKRRGWRIDRGAMKRQAQALIAAFNVKPPVPERPIGTLSGGNVQRAVLARELGE 422 H A G+ I + A+ + A +I F VK P +LSGGN+Q+ ++ RE+ Sbjct: 357 HQTGATIS-SGF-IRKHAIVKMATDVIERFVVKAGGPHAAARSLSGGNLQKYIVGREVMR 414 Query: 423 EDLDGAANVLIVANPVFGLDFASVADIHARLLQARARGAAVLLVSEDLDELLELSDRILV 482 VLIVA P +G+D + A I A L+ R G A+L++SE+LDEL E+SDR++V Sbjct: 415 N-----PKVLIVAQPTWGVDVGAAAQIRAELVALRDAGCALLVISEELDELFEISDRLMV 469 Query: 483 MTEGRIVHVAQDVATQGADRAALGRWMAG 511 + +GR+ + +A+ A +G+WM+G Sbjct: 470 IAKGRL---SPSIASSAATIDLIGQWMSG 495 >gi|152981256|ref|YP_001355254.1| ABC-type uncharacterized transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 523 Score = 256 bits (654), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 185/531 (34%), Positives = 276/531 (51%), Gaps = 37/531 (6%) Query: 6 LEILNAGKSFGSFRALDEVSLKVRAGTIHALLGENGAGKSTLVKGLVGYSPLDQGSILAD 65 LEI K FGS L+++SL V AG +H LLGENGAGKSTL + G D G I D Sbjct: 4 LEIAGVTKRFGSHLVLNDISLNVEAGEVHCLLGENGAGKSTLCNLIFGVHRPDAGLIKYD 63 Query: 66 RREVDIRSARLPHQLGIGMVYQHFTLAPSLTVAENLLLARGDLPWRIRWGSERAVLEEFM 125 E +LGI MV+QHF+L +++V ENL+L R + + R ++E Sbjct: 64 GGEFRPSGPAHALELGIAMVHQHFSLVSNMSVVENLMLGRAQAILKQDFIIRR--MQELA 121 Query: 126 ARMPFKLATERLVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEADEVLGLMHA 185 K+ +V LS GE+Q++EI+K L R L+LDEPT+VL P+E D +L + Sbjct: 122 DEYDLKIDPHCIVGDLSVGERQRIEIIKCLLSNPRLLLLDEPTAVLPPEEVDSLLAVCRK 181 Query: 186 LTRQQELTVLMITHKFNEVSAYADDVTVLRKGRLVASAKVAETSPDALAHWMMGHAREEK 245 + V+++THK E++ AD +VLR+GR+V S + AL M+G + Sbjct: 182 VAESGR-GVILVTHKLAEIAKVADRTSVLRQGRIVESVCMEGADMHALVRSMVGRDVKSG 240 Query: 246 LAVARAA--------------------VPPQAAIG---LEVKDLTVNNDRGVAAVRALSL 282 +V A V ++G L+++ L+ + GV + + L Sbjct: 241 DSVLAATLGILSDAAQDAANATPAAAAVVDSRSLGLPALQLQGLSFQDKDGVTRLSDVHL 300 Query: 283 QVKHGEIVGLAGISGNGQKELVEALLGQRRHLLGQIRV-EGAPYAATREEMRRLRVFALP 341 V GEIVG+AG+ GNGQ EL + G G +++ E ++ +++ +P Sbjct: 301 SVARGEIVGIAGVEGNGQSELGAIIAGLLTPTGGAMKIGEQDLTGSSAQDITDAGAGIIP 360 Query: 342 EEPLRNACIPGMSVAENMALRHFDVAPFKRRGWRIDRGAMKRQAQALIAAFNVKPPVPER 401 E+ ACI +SVAEN+ L + F R G +DR M +QA ++ F+V+ P Sbjct: 361 EDRHAVACISELSVAENLFLGSLE--KFSRFGL-LDREKMAKQAATMMTEFDVRATSPNA 417 Query: 402 PIGTLSGGNVQRAVLARELGEEDLDGAANVLIVANPVFGLDFASVADIHARLLQARARGA 461 P+ +LSGGN Q+AVLAREL + L L+ A P GLD +V + R+ A + G Sbjct: 418 PMSSLSGGNQQKAVLARELSLDPL----IFLLAAQPTRGLDVGAVEAVFNRIRTAASNGL 473 Query: 462 AVLLVSEDLDELLELSDRILVMTEGRIVHVAQDVATQGADRAALGRWMAGH 512 VLL+S DL+EL+ +SDR+ V+ G IV ++ A+R +G M+GH Sbjct: 474 GVLLISSDLNELIAVSDRVAVLYRGAIV---GELPADPANREKIGAMMSGH 521 >gi|152981020|ref|YP_001352897.1| ABC-type uncharacterized transport system, duplicated ATPase component [Janthinobacterium sp. Marseille] Length = 533 Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 145/518 (27%), Positives = 233/518 (44%), Gaps = 59/518 (11%) Query: 6 LEILNAGKSFGSFRALDEVSLKVRAGTIHALLGENGAGKSTLVKGLV--------GYSPL 57 L+I N SF + + +++VS + AG AL+GE+G+GK+ L+ G L Sbjct: 4 LDIQNLQVSFDTSKVVNDVSFSIAAGEKFALVGESGSGKTVTALSLLRLNQDATYGGKIL 63 Query: 58 DQGSILADRREVDIRSARLPHQLGIGMVYQH--FTLAPSLTV----AENLLLARGDLPWR 111 +G + + E +RS R + M++Q L P T+ AE L+L G Sbjct: 64 FEGQDILQKTEAAMRSVRGND---VAMIFQEPMTALNPLFTIGNQIAEVLMLHEG---IS 117 Query: 112 IRWGSERAVLEEFMARMPFKLATERLVS---SLSAGEKQKLEILKQLYLRRRFLILDEPT 168 R + R V E + + R +S LS G++Q+ I L + + LI DEPT Sbjct: 118 ARAAALRTV--ELLDKTGIPEPQRRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPT 175 Query: 169 SVLTPQEADEVLGLMHALTRQQELTVLMITHKFNEVSAYADDVTVLRKGRL--VASAKVA 226 + L +++ L++ L R++ + VLMITH N V +AD V V+ KGRL VA+ + Sbjct: 176 TALDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGRLLEVATTQQL 235 Query: 227 ETSP-DALAHWMMGHAREEKLAVARAAVPPQAAIGLEVKDLTVNNDRG------VAAVRA 279 ++P +A ++ + + V A P + E T + +G AV Sbjct: 236 FSAPREAYTKKLLASQPHQLVNVVSEAATP--LLKAEQVSCTFDIKKGWFKKIPFVAVDQ 293 Query: 280 LSLQVKHGEIVGLAGISGNGQKELVEALLG-QRRHLLGQIRVEG-APYAATREEMRRLR- 336 + +QVK GE +G+ G SG+G+ L ALL H+ G+I +G A +R+ +R LR Sbjct: 294 VDVQVKPGETLGIVGESGSGKSTLGLALLRLSGAHVKGEIAFDGQAITHQSRDALRPLRA 353 Query: 337 ----VFALPEEPLRNACIPGMSVAENMALRHFDVAPFKRRGWRIDRGAMKRQAQALIAAF 392 VF P L V E +AL + P R D Q L A Sbjct: 354 RMQIVFQDPFASLSPRRTVEQIVGEGLALHQPQLGPHGIRKAVAD----GLQEVGLSAEM 409 Query: 393 NVKPPVPERPIGTLSGGNVQRAVLARELGEEDLDGAANVLIVANPVFGLDFASVADIHAR 452 + P SGG QR +AR L + +++++ P LD + + Sbjct: 410 MTRYP------HEFSGGQRQRIAIARALVLK-----PDLILLDEPTSSLDVSVQHQVLLL 458 Query: 453 LLQARAR-GAAVLLVSEDLDELLELSDRILVMTEGRIV 489 L + + G A + +S DL + ++ R++VM +GR+V Sbjct: 459 LADLQKKYGMAYIFISHDLAVIRAMAHRVMVMKDGRVV 496 >gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 123/224 (54%), Gaps = 5/224 (2%) Query: 6 LEILNAGKSFGSFRALDEVSLKVRAGTIHALLGENGAGKSTLVKGLVGYSPLDQGSILAD 65 +E+ K +G+F+ L + + +V G + + G +G+GKSTL+K + G P QG I D Sbjct: 2 IELDKVSKWYGNFQVLTDCTTQVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQQGKITVD 61 Query: 66 RREV-DIRSARLPHQLGIGMVYQHFTLAPSLTVAENLLLARGDLPWR-IRWGSERAVLEE 123 V D ++ + IGMV+Q+F L P L+++ENL LA+ + R + +ER + + Sbjct: 62 GISVGDPKTNLSSLRSRIGMVFQNFELFPHLSISENLTLAQVKVLKRSLPDATERGL--K 119 Query: 124 FMARMPFKLATERLVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEADEVLGLM 183 ++ R+ ++ LS G++Q++ I + L + ++ DEPTS L P+ +EVL +M Sbjct: 120 YLDRVGLIAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVM 179 Query: 184 HALTRQQELTVLMITHKFNEVSAYADDVTVLRKGRLVASAKVAE 227 L Q+ +T++++TH+ A+ V + KG +V E Sbjct: 180 VGLA-QEGMTMMVVTHEMGFAKKVANRVIFMDKGLIVEDCTKDE 222 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 123/222 (55%), Gaps = 17/222 (7%) Query: 6 LEILNAGKSFGSFRALDEVSLKVRAGTIHALLGENGAGKSTLVKGLVGYSPLDQGSILA- 64 + I N KS+GS + L + + V G + A++G++G+GKSTL++ + G +D+GSI Sbjct: 4 IAIDNVKKSYGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSISVA 63 Query: 65 ----DRREVDIRSARLPHQLGIGMVYQHFTLAPSLTVAENLLLARGDLPWRIRWGSE--- 117 + E+++R+ RL +GM++Q F L P L+V N++++ P ++ SE Sbjct: 64 GSHLGKSELELRNLRLK----VGMIFQQFNLFPHLSVGRNIMIS----PMIVKGVSEKDA 115 Query: 118 RAVLEEFMARMPFKLATERLVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEAD 177 RA+ + + ++ + LS G++Q++ I + L + + L+ DE TS L P+ + Sbjct: 116 RALAMKNLEKVGLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVN 175 Query: 178 EVLGLMHALTRQQELTVLMITHKFNEVSAYADDVTVLRKGRL 219 EVL ++ L + +T++M+TH+ D V + +G++ Sbjct: 176 EVLNVVRGLA-HEGMTLIMVTHEMRFAREVCDRVVFMHQGKV 216 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,105,748 Number of extensions: 43775 Number of successful extensions: 409 Number of sequences better than 1.0e-08: 56 Number of HSP's gapped: 320 Number of HSP's successfully gapped: 66 Length of query: 522 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 434 Effective length of database: 895,685 Effective search space: 388727290 Effective search space used: 388727290 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)