BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1220.p
         (227 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981703|ref|YP_001355251.1| isochorismatase hydrolase [Jant...    94   5e-21
gi|152982919|ref|YP_001352707.1| isochorismatase family protein ...    61   6e-11

>gi|152981703|ref|YP_001355251.1| isochorismatase hydrolase
           [Janthinobacterium sp. Marseille]
          Length = 272

 Score = 94.4 bits (233), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 95/195 (48%), Gaps = 5/195 (2%)

Query: 2   IHIDALPYPYQFHPRSTALVVIDMQRDFVEEGGFGSALGNDVRPLGAIVPTVAALLTLAR 61
           I I + P    F    TALVVIDMQ DF  + G+   LG D  P    +  +  LL + R
Sbjct: 49  ITIQSDPQTVTFDAHRTALVVIDMQNDFCAKDGWVDHLGVDYTPCRQPIEPLKKLLPVLR 108

Query: 62  AHQMLVVHTRESHLPDLSDCPRAKRLRGNPT---LGIGDVGP--MGRILVRGEPGNQILP 116
              + ++     + PDL + P  +     P    +G+G+  P  +  +L +      ++ 
Sbjct: 109 DANVPIIWVNWGNRPDLLNMPPNQHHLYKPKGSGIGLGEQLPKRVANVLEKDSWAAAVVD 168

Query: 117 QLAPIEGEIVIDKPGKGAFYATDLHAQLLERGITHLLIAGVTTEVCVQTSMREANDRGYE 176
           +L     +I +DK     F+ T L + L    I  L+ AGV T+ CV  S+++AN  GY 
Sbjct: 169 ELEIHPQDICVDKYRISGFWDTPLDSILRNMDIKTLMFAGVNTDQCVLCSLQDANFLGYA 228

Query: 177 CLVVQDACASYFPEF 191
           C++V+D CA+  PEF
Sbjct: 229 CVMVEDCCATTSPEF 243


>gi|152982919|ref|YP_001352707.1| isochorismatase family protein
           [Janthinobacterium sp. Marseille]
          Length = 239

 Score = 60.8 bits (146), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 87/185 (47%), Gaps = 10/185 (5%)

Query: 8   PYPYQFHPRSTALVVIDMQRDFVEEGGFGSALGNDVRPLGAIVPTVAALLTLARAHQMLV 67
           P  ++      ALVV+D Q DF+   G       +       V  +  L   A++  + V
Sbjct: 20  PSTFKLDLSRAALVVVDPQNDFLSPKGVSWPFFGESITENDTVKHIEQLFIAAKSSDITV 79

Query: 68  VHTRESHLPDLSDCPRAKRLRGNPTLGIGDVGPMGRILVRGEPGN--QILPQLAP--IEG 123
             +   + P   +      L  +    IG  G +G + V G  G+    L +  P  ++G
Sbjct: 80  AVSPHYYYPVDHNWNFGGPLE-HVMHDIGMFGRLGPLTVEGFAGSGADFLEEYKPYILDG 138

Query: 124 EIVIDKPGKGAFY---ATDLHAQLLERGITHLLIAGVTTEVCVQTSMREANDRGYECLVV 180
           + +I  P K   Y   + DL  QL ++G++ ++IAG+   +C+++ +RE  ++G+E +VV
Sbjct: 139 KTIIASPHK--VYGPESNDLALQLRKKGVSQVIIAGMAANLCIESHLRELIEQGFEVVVV 196

Query: 181 QDACA 185
           +DA A
Sbjct: 197 RDATA 201


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 566,470
Number of extensions: 24078
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 2
Length of query: 227
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 147
Effective length of database: 925,261
Effective search space: 136013367
Effective search space used: 136013367
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)