BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1218.p (233 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982182|ref|YP_001354769.1| GntR family transcriptional reg... 231 3e-62 gi|152980771|ref|YP_001354254.1| GntR family transcriptional reg... 78 5e-16 gi|152982451|ref|YP_001355369.1| GntR family transcriptional reg... 61 5e-11 gi|152982693|ref|YP_001351727.1| GntR family transcriptional reg... 56 2e-09 gi|152982557|ref|YP_001351913.1| GntR family transcriptional reg... 56 2e-09 >gi|152982182|ref|YP_001354769.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 235 Score = 231 bits (590), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 111/219 (50%), Positives = 153/219 (69%) Query: 4 TVANPLAEQVYHRIKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEV 63 + + LA Q Y R+K DIF F LPGD F+E EM++R +SRTP+R+ALFRLQREGY+EV Sbjct: 10 VLPDSLASQAYTRLKADIFDFHFLPGDRFSENEMSERLQMSRTPVREALFRLQREGYVEV 69 Query: 64 GFRRGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQQQATAALEQLNAIWLVEPEAREA 123 + GW++ P DF + LYD+R VLE AA+++LC+ +A L+QL +W V R Sbjct: 70 LHKSGWQIRPFDFQMFEQLYDVRSVLECAAVEQLCAMPEAPPLLQQLAELWFVPEHERIT 129 Query: 124 DAVRVAELDEAFHTNLVAAAGNQEMTRVHTEVTEKIRIVRRLDFLKKKRIEATYEEHGKI 183 D ++ DE FH LV A+GN EM R+H ++TE+IR++RRL+F K+ RIE TY EH I Sbjct: 130 DVPTLSVHDERFHEQLVEASGNAEMARIHHDITERIRVIRRLEFTKEMRIEVTYTEHAHI 189 Query: 184 LQLIAKRKSTEAQILLRAHITQSKLEVRKITIWMLAEAR 222 L+ I +++S +A+ LLRAHI S+ EV+KITI ML +AR Sbjct: 190 LRAIIEKRSCQAKDLLRAHIALSQSEVKKITIQMLHQAR 228 >gi|152980771|ref|YP_001354254.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 77.8 bits (190), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 101/195 (51%), Gaps = 2/195 (1%) Query: 10 AEQVYHRIKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRGW 69 +E + +I++ I L PG + ET +A+R GVSRTP+R+AL +L G + + RRG Sbjct: 15 SETLREQIEEMIAVGTLKPGQHLDETVLAERFGVSRTPIREALIQLASMGIVVIRPRRGA 74 Query: 70 KVCPIDFDRLDNLYDLRIVLEMAALDKLCSQQQATAALEQLNAIWLVEPEAR-EADAVRV 128 V I +L ++++ LE A +L +++ + A L A L +AR +AD+ Sbjct: 75 IVAEIGPQQLIEMFEVMAELE-AMCARLAARRMSPAEHAILMATHLACKQARDDADSDAY 133 Query: 129 AELDEAFHTNLVAAAGNQEMTRVHTEVTEKIRIVRRLDFLKKKRIEATYEEHGKILQLIA 188 +E FH + + N + + ++R RRL + R+ A+++EHG ++ I Sbjct: 134 FYKNEEFHQQIYIGSKNTFLEEQARALQRRLRPYRRLQLRVRNRVTASFDEHGAVVDAII 193 Query: 189 KRKSTEAQILLRAHI 203 + K A LLR HI Sbjct: 194 EGKGDLAAELLRQHI 208 >gi|152982451|ref|YP_001355369.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 220 Score = 61.2 bits (147), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 21/204 (10%) Query: 9 LAEQVYHRIKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRG 68 L + + I I+ RL PG E E+A+ GVSRT +R AL RL +E + + +R Sbjct: 2 LTQTIVQTISGAIYERRLPPGTKLNERELAEIFGVSRTVIRQALIRLSQEELITISPKRA 61 Query: 69 WKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQQQATAALEQLNAIWLVEPEAREADAVRV 128 +V F +LY + V+E +D L T EQ+ L E A+E A + Sbjct: 62 SQVAHPSFQEAFDLYQILHVVESGVVDILMQ----TITPEQIA--MLREHTAKEHAAFKA 115 Query: 129 AELDEA------FHTNLVAAAGNQEMTRVHTEVTEKIRIVRRLDFLKKKRIEATY----E 178 + D A FHT L++ N+ + +H + K ++ L +++ Y Sbjct: 116 EDHDLADKLGRGFHTLLISCLANEPLNNMHARLRRKEALITAL-----YKVDFDYCHLRG 170 Query: 179 EHGKILQLIAKRKSTEAQILLRAH 202 EH ++ + R S A+ LL +H Sbjct: 171 EHIALVDSLETRDSFRAKQLLASH 194 >gi|152982693|ref|YP_001351727.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 284 Score = 56.2 bits (134), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 9/209 (4%) Query: 12 QVYHRIKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRGWKV 71 Q+ RI + I + +L PG E ++A GVSRT +R+AL RL G + V RRGW V Sbjct: 12 QIAARITESILAKQLAPGTRLGEQQLADLFGVSRTLIREALMRLATRGIVMVSARRGWFV 71 Query: 72 CPIDFDRLDNLYDLRIVLEMAALDKLCSQQQATAALEQLNAIWLVEPEAREADAVRV-AE 130 ++ R V+E+ L ++ + A+ QL E A D V + Sbjct: 72 IEPTASEAREAFEARRVIELGLLRH--ARPLSKHAIGQLREHIAREQAAIAGDDVGARSY 129 Query: 131 LDEAFHTNLVAAAGNQEMTRVHTEVTEKIRIVRRLDFLKKKRIEATYEEHGKILQLIAKR 190 L FH L GN ++ ++T + + L + ++ + E+H I+ + Sbjct: 130 LLGDFHVCLCECLGNNLLSDTLRDLTARTTLTAMLRQSSSQAVD-SCEDHVHIVAALESG 188 Query: 191 KSTEAQILLRAHITQSKLEVRKITIWMLA 219 EA+ L+ H L+V + T++ LA Sbjct: 189 DIDEAERLMLEH-----LQVVESTLYELA 212 >gi|152982557|ref|YP_001351913.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 236 Score = 55.8 bits (133), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 2/198 (1%) Query: 5 VANPLAEQVYHRIKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEVG 64 +A P +++ + + + + RL+PG E EMA GV RT +R AL RL ++ + + Sbjct: 6 LATP-TQRIVDAVTEAVLAQRLVPGTKLNEAEMADIFGVGRTVIRQALIRLSQDKLVTIE 64 Query: 65 FRRGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQQQATAALEQLNAIWLVEPEAREAD 124 RG + + + +++ +LE AAL+K A + I + D Sbjct: 65 HNRGAHITELSDLEIRETFEVLAMLECAALEKFIKTITAFDIAKLRQHIAHQSGAHQHHD 124 Query: 125 AVRVAELDEAFHTNLVAAAGNQEMTRVHTEVTEKIRIVRRLDFLKKKRIEATYEEHGKIL 184 + L FH +V A N+ + +H ++T + R++ + + + ++H +++ Sbjct: 125 IDQEFRLGPDFHVLIVGLAHNRVLEDIHGKLTAQERLITSQYYGEFDHVHLC-QDHSQLI 183 Query: 185 QLIAKRKSTEAQILLRAH 202 LI AQ LL H Sbjct: 184 DLIESGDLARAQQLLIGH 201 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.134 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 454,562 Number of extensions: 14999 Number of successful extensions: 58 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 56 Number of HSP's successfully gapped: 7 Length of query: 233 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 153 Effective length of database: 925,261 Effective search space: 141564933 Effective search space used: 141564933 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)