BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1216.p (964 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980423|ref|YP_001352518.1| isoleucyl-tRNA synthetase [Jant... 1600 0.0 gi|152980087|ref|YP_001352005.1| valyl-tRNA synthetase [Janthino... 194 3e-50 gi|152980718|ref|YP_001354586.1| leucyl-tRNA synthetase [Janthin... 60 6e-10 >gi|152980423|ref|YP_001352518.1| isoleucyl-tRNA synthetase [Janthinobacterium sp. Marseille] Length = 958 Score = 1600 bits (4144), Expect = 0.0, Method: Compositional matrix adjust. Identities = 755/964 (78%), Positives = 838/964 (86%), Gaps = 6/964 (0%) Query: 1 MSNNESSAKPGKPEKAGKAPSKYPVNMTETAFPMRGDLAKREPQWVKEWQEKKVYQRIRK 60 MS+N++ KPGKP A K SKYPVNMT+T FPMRGDLAKREPQWVK+WQ++KVY++IRK Sbjct: 1 MSDNQN--KPGKP--AAKPQSKYPVNMTDTPFPMRGDLAKREPQWVKQWQDQKVYEKIRK 56 Query: 61 ASAGRPKFILHDGPPYANGDIHIGHAVNKILKDTIVKARNMAGFDAQYVPGWDCHGMPIE 120 AS GRPKFILHDGPPYANGDIH+GHAVNKILKD IVK R GFDA YVPGWDCHGMPIE Sbjct: 57 ASKGRPKFILHDGPPYANGDIHLGHAVNKILKDMIVKTRQFDGFDAPYVPGWDCHGMPIE 116 Query: 121 IQIEKQFGKNLPVAEVQAKARTYAGEQIERQKADFIRLGVLGEWDNPYKTMNFSNEADEL 180 IQIEKQFGKNLP AEV +KAR YA EQ+ERQK DFIRLGVLG+WD PYKTM+F NEADEL Sbjct: 117 IQIEKQFGKNLPTAEVLSKARAYANEQVERQKKDFIRLGVLGQWDKPYKTMDFGNEADEL 176 Query: 181 RALGKILEKGYVYRGLKPVNWCFDCGSALAEAEVEYQDKRDPAIDVGFPFAEHDKVATAF 240 RALG +LEKGYVYRGLKPVNWCFDCGSALAEAEVEYQDKRDPAIDVGFPFAE +KVA AF Sbjct: 177 RALGSLLEKGYVYRGLKPVNWCFDCGSALAEAEVEYQDKRDPAIDVGFPFAEPEKVAKAF 236 Query: 241 GLTELPTRNGYIVIWTTTPWTIPANQALNVHPEFDYALVETTRNGEATLLILAKDLVASC 300 GL +LPT GY +IWTTTPWTIPANQALNVH + YALV RNG LLILA DLV + Sbjct: 237 GLAKLPTNKGYAIIWTTTPWTIPANQALNVHGDLPYALVNVVRNGVPQLLILAADLVGTV 296 Query: 301 LERFGLEGKVIATTTGEKLSLIRFHHPLAKADAGYDRLSPVFLGEYVTADSGTGIVHSSP 360 L+R GL G+ IA G L IRF HP A D GY+R SP++L YV ADSGTGIVHS+P Sbjct: 297 LQRCGLTGETIAICEGSALEGIRFKHPFADLDPGYNRESPIYLATYVAADSGTGIVHSAP 356 Query: 361 AYGIEDFISCKAHGMKDDDILNPVMGDGRYASWLPLFAGLTIWEASKPICDKLAEMGSLF 420 AYGIEDFISCK+HGM+DD+I+ PVMGDG+YASWLPLF GLTIWEASKPIC KL E+GSLF Sbjct: 357 AYGIEDFISCKSHGMRDDEIIAPVMGDGKYASWLPLFGGLTIWEASKPICAKLDEVGSLF 416 Query: 421 KLVMFSHSYMHCWRHKSPIIYRATSQWFASMDNTPKDGGPSLRQTALQGIEDTAFFPGWG 480 KLVMF HSYMHCWRHK+PIIYRATSQWFA MD PK+ G +LR+TALQ IE+T FFP WG Sbjct: 417 KLVMFDHSYMHCWRHKTPIIYRATSQWFAGMDVMPKNQGATLRETALQAIEETEFFPSWG 476 Query: 481 KARLHGMIANRPDWTLSRQRQWGVPMAFFVHKETGELHPRTPELIEQVAQRIEKSGIEAW 540 KARLHGMIANRPDWTLSRQRQWGVPMAFFVHKETG+LHPRTPEL+EQ+AQR+EK GIEAW Sbjct: 477 KARLHGMIANRPDWTLSRQRQWGVPMAFFVHKETGDLHPRTPELLEQIAQRVEKDGIEAW 536 Query: 541 QALDPKELLGADAEHYVKNRDTLDVWFDSGTTHQTVLRGSHAQQSQFPADLYLEGSDQHR 600 LDPKELLGADA+ Y+KN+DTLDVWFDSG THQTVLRGSH ++ FPADLYLEGSDQHR Sbjct: 537 LTLDPKELLGADADMYLKNKDTLDVWFDSGCTHQTVLRGSHKEELAFPADLYLEGSDQHR 596 Query: 601 GWFHSSLLTSSMLNGRAPYKALLTHGFVVDGEGKKMSKSKGNVVAPQKVSDSLGAEILRL 660 GWFHSSLLTSSM+NGRAPYKALLTHGF VDGEGKKMSKS GN +APQK+SD+LGA+ILRL Sbjct: 597 GWFHSSLLTSSMMNGRAPYKALLTHGFTVDGEGKKMSKSLGNTLAPQKISDTLGADILRL 656 Query: 661 WVASTDYSGELSISDEILKRVVEAYRRIRNTLRFLLANTSDFDPTQHAVPVAEMLEIDRY 720 W+ASTDYSGELSISDEILKRV E+YRRIRNT+RFLL+NTSDFD + VPVA+MLEIDRY Sbjct: 657 WIASTDYSGELSISDEILKRVTESYRRIRNTVRFLLSNTSDFDAAKDLVPVADMLEIDRY 716 Query: 721 AIANMARLQAEVLAHFETYEFHPVVAKLQMYCSEDLGGFYLDILKDRLYTSGVESAARRS 780 A+A M +QAE+LAH++ YEFHPVV+KLQMYCSEDLGGFYLDILKDRLYTSGV S ARRS Sbjct: 717 AVAQMNAMQAEILAHYKVYEFHPVVSKLQMYCSEDLGGFYLDILKDRLYTSGVTSHARRS 776 Query: 781 AQSAVWHITQSLLRLMAPILSFTAEEAWRYFASKEAYEASGETIFSQVYYTLPEVADADA 840 AQSA+WH+T SLLRLMAPILSFTAEEAW FAS + + TIF+ +Y LPEV+D A Sbjct: 777 AQSAIWHLTHSLLRLMAPILSFTAEEAWAVFASPDV--NTDGTIFTHTFYQLPEVSDGAA 834 Query: 841 LLSKFAVLHEVRAAVTKQLEEVRIAGSIGSSLQAEVELKVSGEKAALLESLGDDLKFVLI 900 LL+K+ +L EVR VTKQLEEVR+AG IGSSLQAEVELK SG+K A L SL DDLKFVLI Sbjct: 835 LLAKYTLLREVRNDVTKQLEEVRVAGGIGSSLQAEVELKASGDKFAALASLDDDLKFVLI 894 Query: 901 TSAARVTPVATAEEEAVVVTPSTHQKCERCWHYRADVGSHADHPGLCGRCYSNLFGQGEP 960 TS A V+ VA+AEEE+VVVTPST+QKCERCWHYRADVGSHA+H GLCGRC +NLFG+GE Sbjct: 895 TSQAGVSQVASAEEESVVVTPSTYQKCERCWHYRADVGSHAEHEGLCGRCVANLFGKGEA 954 Query: 961 RQFA 964 R+FA Sbjct: 955 RRFA 958 >gi|152980087|ref|YP_001352005.1| valyl-tRNA synthetase [Janthinobacterium sp. Marseille] Length = 965 Score = 194 bits (492), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 213/875 (24%), Positives = 357/875 (40%), Gaps = 163/875 (18%) Query: 37 DLAKREPQWVKEWQEKKVYQRIRKASAGRPKFILHDGPPYANGDIHIGHAVNKILKDTIV 96 D A E W EW+++ Y A +P F + PP G +H+GH N+ + D + Sbjct: 8 DPADIEAFWRTEWEKRGYY--TATTDADKPAFSIQLPPPNVTGTLHLGHGFNQTIMDGLT 65 Query: 97 KARNMAGFDAQYVPGWDCHGMPIEIQIEKQ----------FGKNLPVAEVQAKARTYAGE 146 + M GF+ ++PG D G+ +I +E+Q G+ V +V + + +G Sbjct: 66 RYHRMRGFNTAWIPGTDHAGIATQIVVERQLDAQKITRHDLGREKFVEKVW-EWKEKSGS 124 Query: 147 QIERQKADFIRLGVLGEWDNPYKTMNFSNEADELRALGKILEKGYVYRGLKPVNWCFDCG 206 I Q RLG +W Y TM+ +++E+G +YRG + VNW G Sbjct: 125 TITGQ---IRRLGASPDWSREYFTMDEPRSKTVTEVFVRLVEQGLIYRGKRLVNWDPVLG 181 Query: 207 SALAEAEVEYQDKRDPAIDVGFPFAEHD--KVATAF----GLTELPTRNGYIVIWTTTPW 260 +A+++ EV +++ ++ +P A+ K AF TE RN +IV+ TT P Sbjct: 182 TAVSDLEVVSEEEDGQMWNIRYPLADGSSYKFPIAFDEAGNATEWEERN-FIVVATTRPE 240 Query: 261 TIPANQALNVHPEFDYALVETTRNGEATLLILAKDLVASCLERFGLEGKVIATTTGEKLS 320 T+ + A+ V P TR L GK++ Sbjct: 241 TMLGDVAVAVDP-------TDTRYQH-------------------LVGKLLTL------- 267 Query: 321 LIRFHHPLAKADAGYDRLSPVFLGEYVTADSGTGIVHSSPAYGIEDFISCKAHGMKDDDI 380 PL +R P+ +YV + GTG V +PA+ D+ + H + I Sbjct: 268 ------PLC------ERTIPIIADDYVDKEFGTGCVKITPAHDFNDYAVGQRHNLDKISI 315 Query: 381 LNPVMGDGRYASWLP-LFAGLTIWEASKPICDKLAEMGSLFKLVMFSHSYM--HCWRHKS 437 L D + P + GL + A K I L G L +LV H M R + Sbjct: 316 LTL---DAKINENAPAAYQGLDRFAARKQIVADLDAQG-LLELVK-PHKLMVPRGDRTNT 370 Query: 438 PIIYRATSQWFASMDNTPKDG----GPSLRQTALQGIED--TAFFPGWGKARLHGMIANR 491 I T QWF +M +G G S+ + AL+ + + P + + N Sbjct: 371 VIEPMLTDQWFVAMSKPAPEGTYFPGKSITEVALEKVANGEIKMLPENWTNTYNQWLNNI 430 Query: 492 PDWTLSRQRQWGVPMAFFVHKETGELHPRTPELIEQVAQRIEKSGIEAWQALDPKELLGA 551 DW +SRQ WG + + E G+++ VA+ +++ +A A G Sbjct: 431 QDWCISRQLWWGHQIPAWYDSE-GKVY---------VARNEDEAKAKATAA-------GY 473 Query: 552 DAEHYVKNRDTLDVWFDSGTTHQTVLRGSHAQQSQF----PADLYLEGSDQHRGWFHSSL 607 + ++ D LD WF S + L G + F P+ + + G D W + Sbjct: 474 NGP-LTRDEDVLDTWFSSALVPFSTL-GWPEETPDFKTFLPSSVLVTGFDIIFFWVARMV 531 Query: 608 LTSSMLNGRAPYKALLTHGFVVDGEGKKMSKSKGNVVAPQKVSDSL-------------- 653 + ++ G+ P+K + HG + D G+KMSKSKGN + P + D + Sbjct: 532 MMTTHFTGKVPFKTVYVHGLIRDSSGQKMSKSKGNTLDPIDLIDGINVDELVAKRTVGLM 591 Query: 654 -----------------------GAEILRLWVASTDYSGELSISDEILKRVVEAYRRIRN 690 G + LR +AS G +I+ ++ + E YR N Sbjct: 592 NPKQAASIEKSTRKEFPAGISAYGTDALRFTMASYASLGR-NINFDLSR--CEGYRNFCN 648 Query: 691 TL----RFLLANTSDFDPTQHAVPVA----------EMLEIDRYAIANMARLQAEVLAHF 736 L RF+L N D P A + + DR+ ++ + R +A++ F Sbjct: 649 KLWNATRFVLMNCEGHDCGFRDAPCAAGDCDPGGYTDFSQADRWIVSKLQRTEADIAKGF 708 Query: 737 ETYEFHPVVAKLQMYCSEDLGGFYLDILKDRLYTSGVESAARRSAQSAVWHITQSLLRLM 796 Y F + A L + ++ +YL++ K ++ T G E A +R+ + + + +++LRL Sbjct: 709 ADYRFDNIAASLYQFIWDEYCDWYLEVAKVQIQT-GTE-AQQRATRRTLLRVLETILRLA 766 Query: 797 APILSFTAEEAWRYFASKEAYEAS--GETIFSQVY 829 P++ F E W+ A Y+ + G++I Q Y Sbjct: 767 HPVIPFITEALWQTVAPLTGYKPNPAGDSIMLQPY 801 >gi|152980718|ref|YP_001354586.1| leucyl-tRNA synthetase [Janthinobacterium sp. Marseille] Length = 881 Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 93/428 (21%), Positives = 145/428 (33%), Gaps = 83/428 (19%) Query: 75 PYANGDIHIGHAVNKILKDTIVKARNMAGFDAQYVPGWDCHGMPIEIQIEKQFGKNLPVA 134 PY +G +H+GH N + D + + M G++ GWD GMP E N+P A Sbjct: 48 PYPSGKLHMGHVRNYTINDVMYRYLRMNGYNVLMPMGWDAFGMPAE---NAAMANNVPPA 104 Query: 135 EVQAKARTYAGEQIERQKADFIRLGVLGEWDNPYKTMNFSNEADELRALGKILEKGYVYR 194 + TYA I+ K +G+ +W K+LEKG +Y+ Sbjct: 105 Q-----WTYA--NIDYMKTQMASMGLAIDWSREMTACRPEYYKWNQWMFLKMLEKGIIYK 157 Query: 195 GLKPVNWCFDCGSALAEAEV-------------------------EYQDKRDPAIDVGFP 229 VNW + LA +V +Y ++ +D P Sbjct: 158 KTGTVNWDPIDQTVLANEQVIDGRGWRSGALIEKREIPMYYARITDYAEELLDHVDNKLP 217 Query: 230 -FAEHDKVATA----------FGLTELPTRNGYIV------IWTTTPWTIPANQALNVHP 272 + E ++ + F T G ++ ++TT TI V P Sbjct: 218 GWPERVRIMQSNWIGKSTGVRFAFTHDIAEEGKLINDGKLWVFTTRADTIKGVTFCAVAP 277 Query: 273 EFDYALVETTRNGEATLLILAKDLVASCLERFGLEGKVIATTTGEKLSLIRFHHPLAKAD 332 E A N E T D +A C +E + + + HPL Sbjct: 278 EHALATFAAKSNPELT------DFIAECKLGSVIEADMATMEKKGMPTGLFVKHPLTG-- 329 Query: 333 AGYDRLSPVFLGEYVTADSGTGIVHSSPAYGIEDFISCKAHGMKDD---DILNPVMGDGR 389 +L V++G YV G G V PA+ DF + + + D+ D Sbjct: 330 ----QLVEVWVGNYVLITYGDGAVMGVPAHDERDFAFAQKYVLPIHPVIDVPGKTFSDVA 385 Query: 390 YASWL-----------PLFAGLTIWEASKPICDKLAEMG-----SLFKLVMFSHSYMHCW 433 + W + GL +A I LAE+G ++L + S W Sbjct: 386 WHEWYGDKENGRCINSGKYDGLNYQQAVDAIAADLAELGLGEKKITYRLRDWGISRQRYW 445 Query: 434 RHKSPIIY 441 PII+ Sbjct: 446 GTPIPIIH 453 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.134 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 2,206,708 Number of extensions: 93032 Number of successful extensions: 277 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 270 Number of HSP's successfully gapped: 5 Length of query: 964 Length of database: 1,221,021 Length adjustment: 92 Effective length of query: 872 Effective length of database: 880,897 Effective search space: 768142184 Effective search space used: 768142184 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)