BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1215.p
         (171 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979827|ref|YP_001352517.1| lipoprotein signal peptidase [J...   261   1e-71

>gi|152979827|ref|YP_001352517.1| lipoprotein signal peptidase
           [Janthinobacterium sp. Marseille]
          Length = 165

 Score =  261 bits (668), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 126/170 (74%), Positives = 147/170 (86%), Gaps = 5/170 (2%)

Query: 1   MATKKRSSSSGSSSSTQGLLPWLGIATIVLLLDQLSKITILKLFHYGESLPITGFFNLVL 60
           MA+ KR  SS SS     +LPWLGIA +++LLDQ++KITI +LF YGES  +T FFNLVL
Sbjct: 1   MASNKRYFSSSSS-----MLPWLGIAAVLVLLDQITKITITRLFVYGESHAVTSFFNLVL 55

Query: 61  VYNKGAAFSFLAASGGWQRYLFTAIGIGAAIFIIHLLRRHPGQRMFCWALALILGGAIGN 120
           VYNKGAAFSFLA+  GWQRY FT +GIGAAIFII+LL++H GQR+FCWALALILGGAIGN
Sbjct: 56  VYNKGAAFSFLASETGWQRYFFTIMGIGAAIFIIYLLKKHAGQRLFCWALALILGGAIGN 115

Query: 121 VIDRVVYGHVIDFLDVYVGNWHWPAFNLADSAICLGAVLFVVDELRRVSK 170
           VIDRV+YGHVIDFLDV++G WHWPAFN+ADSAIC+GAVLF+ DELRRV K
Sbjct: 116 VIDRVLYGHVIDFLDVHIGGWHWPAFNIADSAICIGAVLFIYDELRRVGK 165


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.328    0.143    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 320,865
Number of extensions: 10785
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 94
Effective length of database: 936,352
Effective search space: 88017088
Effective search space used: 88017088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 126 (53.1 bits)