BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1212.p
         (363 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982203|ref|YP_001352514.1| hypothetical protein mma_0824 [...   406   e-115

>gi|152982203|ref|YP_001352514.1| hypothetical protein mma_0824
           [Janthinobacterium sp. Marseille]
          Length = 362

 Score =  406 bits (1044), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/365 (55%), Positives = 258/365 (70%), Gaps = 17/365 (4%)

Query: 7   PAWQKLKTL----ATLAPLAIL-AACAT---QEPGPAPATPSKPVTVTAPAPRPVVDNPQ 58
           P   K+K L      L P+A+L A C+T     PG  P T          AP PV ++ Q
Sbjct: 7   PVMSKMKRLPPATTALFPIALLLAGCSTVSLDTPGARPGTV---------APAPVTESAQ 57

Query: 59  QQQLRELINQQDRLYRVAAPLLTNNAQLCRGNARNLLGFTAKNKYSFPIEFADTARSLGY 118
           +Q LR +  QQDRLYR+AAPLL NNA LC+GNARNL+GF+AK KYSF  ++ + A+SLG+
Sbjct: 58  KQALRNVTAQQDRLYRLAAPLLVNNAALCKGNARNLIGFSAKTKYSFSEDYVEAAQSLGF 117

Query: 119 DDRLQVTGVLPGSGAEQAGIQRGDVLISVAGKPMPQGTDAERQAAVLLSPLVVKKAPIAL 178
           D+RLQVTGVL  SGA +AG++RGD+L +V  KPMPQG +AERQAA +L PLV   + + L
Sbjct: 118 DERLQVTGVLNNSGAARAGVKRGDILATVQDKPMPQGPNAERQAAAILGPLVNSTSNVKL 177

Query: 179 GVQRNGQNSVVNVPLTYACAFSIELGNADNVNTYADGRRVLITRGMLKFTQSDDELAYLI 238
           G+ RNG N  V VPLT AC F IELGN DNV+ YADGRRVL+TRGML F ++D+E+AY++
Sbjct: 178 GLIRNGSNVAVTVPLTRACGFGIELGNTDNVSAYADGRRVLVTRGMLNFARNDNEVAYVL 237

Query: 239 AKDMAHNILGHAIRQRMVSTIAEVIDNLLLPHPDPTTTAGTAGIRVYPQDLDAAADTLSL 298
           AK++AHN LGH  +QRM +T+  VIDN++   PD     G+ GI+  PQ+ DAAAD L+L
Sbjct: 238 AKELAHNALGHPAQQRMSATVGGVIDNMIRITPDAGALGGSGGIKAVPQETDAAADHLAL 297

Query: 299 YLLARAGYNIDNVPAFWKRLADQYPASVPNGYTALHPSTAYRLAMIEKVTQIVKAKQEAG 358
           Y+L R GYNID   +FW+RLA QYPASV N YTA+HP+T+YRL  I+K    +KAKQ A 
Sbjct: 298 YMLVRGGYNIDGANSFWQRLAAQYPASVANSYTAIHPATSYRLTTIDKTVSEIKAKQAAK 357

Query: 359 KPLVP 363
           + LVP
Sbjct: 358 QNLVP 362


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 782,023
Number of extensions: 32285
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 279
Effective length of database: 910,473
Effective search space: 254021967
Effective search space used: 254021967
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)