BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1211.p (767 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980685|ref|YP_001354204.1| ATP-dependent Clp protease ATP-... 1447 0.0 gi|152979798|ref|YP_001353008.1| ATP-dependent Clp protease ATP-... 306 3e-84 >gi|152980685|ref|YP_001354204.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Janthinobacterium sp. Marseille] Length = 767 Score = 1447 bits (3747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 705/768 (91%), Positives = 739/768 (96%), Gaps = 2/768 (0%) Query: 1 MIAQELEVSLHMAFVEARQSRHEFITVEHLLLALLDNPSAAEVLRACSVNIDDLRKTLTN 60 MIAQELEVSLHMAFVEARQ+RHEFITVEHLLLALLDNPSAAEVLRAC+VNI+DLRKTLTN Sbjct: 1 MIAQELEVSLHMAFVEARQARHEFITVEHLLLALLDNPSAAEVLRACAVNIEDLRKTLTN 60 Query: 61 FITDNTPTVPGTNEVDTQPTLGFQRVIQRAIMHVQSASNGKKEVTGANVLVAIFGEKDSH 120 FI DNTPTVPG EVDTQPTLGFQRVIQRAIMHVQSASNGKKEVTGANVLVAIFGEKDSH Sbjct: 61 FIGDNTPTVPGAAEVDTQPTLGFQRVIQRAIMHVQSASNGKKEVTGANVLVAIFGEKDSH 120 Query: 121 AVYYLHQQGVTRLDVVNFISHGVRKDQQTDPQKAPEGAEDV-QAEGQQKESPLDQFTQNL 179 AVYYLHQQGVTRLDVVNFISHGVRKDQQ+D QKAPEGAED EGQQKES LDQFTQNL Sbjct: 121 AVYYLHQQGVTRLDVVNFISHGVRKDQQSDAQKAPEGAEDAPSGEGQQKESALDQFTQNL 180 Query: 180 NKAAAEGKIDPLIGRESEVERVIQTLCRRRKNNPLLVGEAGVGKTAIAEGLAWRVTQGDV 239 NK A+EGKIDPLIGRE EVERVIQTLCRRRKNNPLLVGEAGVGKTAIAEGLAWR+TQGDV Sbjct: 181 NKMASEGKIDPLIGREGEVERVIQTLCRRRKNNPLLVGEAGVGKTAIAEGLAWRITQGDV 240 Query: 240 PEILKNAVVYSLDMGALLAGTKYRGDFEQRLKAVLKQLKDSPNGILFIDEIHTIIGAGSA 299 PE+L+NAVVYSLDMGALLAGTKYRGDFEQRLKAVLKQLKD+PNGILFIDEIHTIIGAGSA Sbjct: 241 PEVLQNAVVYSLDMGALLAGTKYRGDFEQRLKAVLKQLKDNPNGILFIDEIHTIIGAGSA 300 Query: 300 SGGTLDASNLLKPALSSGQLKCIGATTYTEFRGVFEKDHALSRRFQKIDVNEPTVEQTVQ 359 SGGTLDASNLLKPALS+GQLKCIGATT+TEFRGVFEKDHALSRRFQKIDVNEPTVEQT+Q Sbjct: 301 SGGTLDASNLLKPALSNGQLKCIGATTFTEFRGVFEKDHALSRRFQKIDVNEPTVEQTIQ 360 Query: 360 ILRGLKSKFEEHHGVKYSASALTSAAELAARFINDRHLPDKAIDVIDEAGAAQRILPKSK 419 ILRGLKS+FEEHHGVKYSASALTSAAELAARFINDRHLPDKAIDVIDEAGAAQRILPKSK Sbjct: 361 ILRGLKSRFEEHHGVKYSASALTSAAELAARFINDRHLPDKAIDVIDEAGAAQRILPKSK 420 Query: 420 QKKTIGKPEIEEIISKIARIPPQSVNQDDRAKLQTIERDLKNVVFGQDPAIEALASAIKM 479 QKKTIGK EIE+IISKIARIP Q+VNQDDR+KLQTI+RDLKNVVFGQDPA+EAL SAIK+ Sbjct: 421 QKKTIGKSEIEDIISKIARIPAQTVNQDDRSKLQTIDRDLKNVVFGQDPALEALGSAIKV 480 Query: 480 ARAGLGKTDKPIGSFLFSGPTGVGKTEVAKQLAFILGIELVRFDMSEYMERHAVSRLIGA 539 ARAGLGKTDKPIGSFLFSGPTGVGKTE AKQLAFI+GI+L+RFDMSEYMERHAVSRLIGA Sbjct: 481 ARAGLGKTDKPIGSFLFSGPTGVGKTEAAKQLAFIMGIDLIRFDMSEYMERHAVSRLIGA 540 Query: 540 PPGYVGFDQGGLLTEAVNKKPHAVLLLDEIEKAHPDIFNILLQVMDHGTLTDNNGRKTDF 599 PPGYVGFDQGGLLTEA+ KKPHAVLLLDEIEKAHPDIFNILLQVMDHGTLTDNNGRK DF Sbjct: 541 PPGYVGFDQGGLLTEAITKKPHAVLLLDEIEKAHPDIFNILLQVMDHGTLTDNNGRKADF 600 Query: 600 RNVIIIMTTNAGAESLQKRTIGFTEKKEAGDEMADIKRMFTPEFRNRLDAIISFRPLDEE 659 RNVIIIMTTNAGAESLQKRTIGFTEKKE GDEMADIKRMFTPEFRNRLDAIISFR LDEE Sbjct: 601 RNVIIIMTTNAGAESLQKRTIGFTEKKETGDEMADIKRMFTPEFRNRLDAIISFRALDEE 660 Query: 660 IILRVVDKFLMQLEEQLHEKKVEAVFSDSLRKFLGKKGFDPLMGARPMSRLIQDLIRKAL 719 IILRVVDKFLMQLEEQLHEKKVEA+F++ LR FL KKGFDPLMGARPMSRLIQD+IRKAL Sbjct: 661 IILRVVDKFLMQLEEQLHEKKVEAIFTEKLRTFLAKKGFDPLMGARPMSRLIQDMIRKAL 720 Query: 720 ADELLFGKLVSGGRVTVEMDDKDQIKLDFPEGDDSSPPEEPQEKLEVE 767 ADELLFG+LVSGG+VTV++DDKDQIKLDF EG D++PP E +EVE Sbjct: 721 ADELLFGRLVSGGKVTVDLDDKDQIKLDFSEG-DTAPPAATPETVEVE 767 >gi|152979798|ref|YP_001353008.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Janthinobacterium sp. Marseille] Length = 859 Score = 306 bits (784), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 181/401 (45%), Positives = 249/401 (62%), Gaps = 21/401 (5%) Query: 22 HEFITVEHLLLALL--DNPSAAEVLRACSVNIDDLRKTLTNFITDNTPTVPGTNEVDTQP 79 +++I H+L+ALL D+ S +L+ NI+ + L + + D P V GT + Sbjct: 26 NQYIEPVHVLVALLSQDDSSTRSLLQRAGANINGMTTALRSAL-DRLPKVSGTG---GEV 81 Query: 80 TLGFQRVIQRAIMHVQSASNGKKEVTGANVLVAIFGEKDSHAVYYLHQQGVTRLDVVNFI 139 +G + +S +G + + VL+A+ +K S A + G+TR + I Sbjct: 82 QIGRDLSSLLNLADKESQMHGDQFIATEMVLLALTEDK-SEAGKIARENGLTRKALEAAI 140 Query: 140 SHGVRKDQQTDPQKAPEGAEDVQAEGQQKESPLDQFTQNLNKAAAEGKIDPLIGRESEVE 199 VR + D A+G+ + L ++T +L + A GK+DP+IGR+ E+ Sbjct: 141 K-AVRGSSKVD-----------SADGEGQREALKKYTLDLTERARIGKLDPVIGRDDEIR 188 Query: 200 RVIQTLCRRRKNNPLLVGEAGVGKTAIAEGLAWRVTQGDVPEILKNAVVYSLDMGALLAG 259 R IQ L RR KNNP+L+GE GVGKTAI EGLA R+ G+VP+ LK V SLDM +LLAG Sbjct: 189 RAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPDSLKGKRVLSLDMASLLAG 248 Query: 260 TKYRGDFEQRLKAVLKQL-KDSPNGILFIDEIHTIIGAGSASGGTLDASNLLKPALSSGQ 318 KYRG+FE+RLKAVL +L +D I+FIDE+HT++GAG A G +DA N+LKPAL+ G+ Sbjct: 249 AKYRGEFEERLKAVLTELAEDEGQTIVFIDEMHTLVGAGKAEGA-MDAGNMLKPALARGE 307 Query: 319 LKCIGATTYTEFRGVFEKDHALSRRFQKIDVNEPTVEQTVQILRGLKSKFEEHHGVKYSA 378 L C+GATT E+R EKD AL RRFQKI V EPTVE T+ ILRGL+ K+E HHGV + Sbjct: 308 LHCVGATTLDEYRKYIEKDAALERRFQKIIVAEPTVEATIAILRGLQEKYELHHGVDITD 367 Query: 379 SALTSAAELAARFINDRHLPDKAIDVIDEAGAAQRILPKSK 419 A+ +AAEL+ R+I DR LPDKAID+IDEA + +I SK Sbjct: 368 PAIVAAAELSHRYITDRFLPDKAIDLIDEAASKIKIELDSK 408 Score = 280 bits (715), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 152/343 (44%), Positives = 211/343 (61%), Gaps = 30/343 (8%) Query: 421 KKTIGKPEIEEIISKIARIPPQSVNQDDRAKLQTIERDLKNVVFGQDPAIEALASAIKMA 480 + +G EI E++S+ IP + +R KL +E L V GQ AI A++ AI+ + Sbjct: 530 RTQVGAEEIAEVVSRATGIPVSRMMTGEREKLLQMEDALHKRVVGQHEAIVAVSDAIRRS 589 Query: 481 RAGLGKTDKPIGSFLFSGPTGVGKTEVAKQLA-FILGIE--LVRFDMSEYMERHAVSRLI 537 RAGLG D+P GSF+F GPTGVGKTE+ K LA F+ E L+R DMSE+ME+H+V+RLI Sbjct: 590 RAGLGDPDRPYGSFMFLGPTGVGKTELCKALASFMFDTEDSLIRIDMSEFMEKHSVARLI 649 Query: 538 GAPPGYVGFDQGGLLTEAVNKKPHAVLLLDEIEKAHPDIFNILLQVMDHGTLTDNNGRKT 597 GAPPGYVG+++GG LTEAV +KP+ V+LLDEIEKAHPD+FN+LLQV+D G +TD GR Sbjct: 650 GAPPGYVGYEEGGYLTEAVRRKPYCVILLDEIEKAHPDVFNVLLQVLDDGRMTDGQGRTV 709 Query: 598 DFRNVIIIMTTNAGAESLQKRTIGFTEKKEAGDE--------MADIKRMFTPEFRNRLDA 649 DF+N +I+MT+N G+ +Q G+E MA+++ F PEF NR+D Sbjct: 710 DFKNTVIVMTSNLGSHKIQSME---------GNEPALIKMAVMAEVQGHFRPEFINRIDE 760 Query: 650 IISFRPLDEEIILRVVDKFLMQLEEQLHEKKVEAVFSDSLRKFLGKKGFDPLMGARPMSR 709 I++F LDE+ I + L LE++L + S+ + + + GFDP+ GARP+ R Sbjct: 761 IVAFHALDEKNIGSIAKIQLQVLEKRLARMDMSMDVSEDALQKIAEAGFDPVYGARPLKR 820 Query: 710 LIQDLIRKALADELLFGKLVSGGRVTVEMDDKDQIKLDFPEGD 752 IQ I L+ +L GK KD I LD +G+ Sbjct: 821 AIQHQIENPLSKAILEGKF----------GPKDVISLDVQDGE 853 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.135 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,672,501 Number of extensions: 71202 Number of successful extensions: 283 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 280 Number of HSP's successfully gapped: 4 Length of query: 767 Length of database: 1,221,021 Length adjustment: 91 Effective length of query: 676 Effective length of database: 884,594 Effective search space: 597985544 Effective search space used: 597985544 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)