BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1209.p
         (68 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983285|ref|YP_001354206.1| cold-shock DNA-binding domain-c...   132   6e-33
gi|152983242|ref|YP_001353208.1| cold shock transcription regula...   115   6e-28

>gi|152983285|ref|YP_001354206.1| cold-shock DNA-binding
          domain-containing protein [Janthinobacterium sp.
          Marseille]
          Length = 67

 Score =  132 bits (331), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 64/65 (98%), Positives = 65/65 (100%)

Query: 1  MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFDVTQGPKGKQ 60
          MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQF+VTQGPKGKQ
Sbjct: 1  MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFEVTQGPKGKQ 60

Query: 61 ASNIQ 65
          ASNIQ
Sbjct: 61 ASNIQ 65


>gi|152983242|ref|YP_001353208.1| cold shock transcription
          regulator protein [Janthinobacterium sp. Marseille]
          Length = 67

 Score =  115 bits (287), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 54/65 (83%), Positives = 60/65 (92%)

Query: 1  MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFDVTQGPKGKQ 60
          MATG VKWFNDSKGFGFITPD+GGEDLFAHFSAIQ +GFK+L+E Q+V F+VT GPKGKQ
Sbjct: 1  MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSSGFKSLQENQRVSFEVTAGPKGKQ 60

Query: 61 ASNIQ 65
          ASNIQ
Sbjct: 61 ASNIQ 65


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 166,503
Number of extensions: 5570
Number of successful extensions: 13
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 2
Length of query: 68
Length of database: 1,221,021
Length adjustment: 40
Effective length of query: 28
Effective length of database: 1,073,141
Effective search space: 30047948
Effective search space used: 30047948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 122 (51.6 bits)