BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1208.p (418 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980642|ref|YP_001355189.1| isocitrate dehydrogenase (NAD+)... 180 2e-46 gi|152979772|ref|YP_001352927.1| tartrate dehydrogenase [Janthin... 106 2e-24 gi|152979812|ref|YP_001353859.1| 3-isopropylmalate dehydrogenase... 87 3e-18 >gi|152980642|ref|YP_001355189.1| isocitrate dehydrogenase (NAD+) [Janthinobacterium sp. Marseille] Length = 349 Score = 180 bits (456), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 123/388 (31%), Positives = 191/388 (49%), Gaps = 55/388 (14%) Query: 31 IPFIMGDGVGVDVTPVMLKVVDAAVAKAYGGARKIHWMEIYAGEKATKLYGQDVWLPDET 90 + I GDG+G ++ V+++V DA W AG A + G LP T Sbjct: 12 VTLIPGDGIGPEIVDVVVRVFDAL-------GNPFAWETQQAGVNALEKSGD--LLPQTT 62 Query: 91 LEVLKQYLVSIKGPLSTPVGGGIRSLNVTMRQQLDLYVCLRPVRYFKGVPSPLREPEKTD 150 L+ + + +++KGPLSTP+GGG RS+NV +R+ LY +RP R P EK D Sbjct: 63 LDSIGRTGLALKGPLSTPIGGGFRSVNVRLRETFQLYANVRPARTI----VPGGRYEKID 118 Query: 151 MVIFRENSEDIYAGIEWQAGTPEVKKLIELLTREMGVKKLRFPETSALGIKPVSREGTER 210 +V+ REN E +Y G E + + + T GI +R G+ R Sbjct: 119 LVLVRENLEGLYVGHEHYVPIGDDAHAVAMAT----------------GIN--TRAGSRR 160 Query: 211 LVRKAIQYAIDHDKPSVTLVHKGNIMKYTEGAFRDWGYALAGREFGAELIDDGPWMRLKN 270 + + A YA+ +++ VT+VHK N++K G F + ++ G D Sbjct: 161 ISKFAFDYAVRNNRRKVTIVHKANVLKALTGLFLE-----TAKQVGLNYAD--------- 206 Query: 271 PKTGRQIIIKDAITDAFFQQVLMRPAEYSVIATMNLNGDYISDAVAAQVGGIGIAPGANM 330 QI D I DA Q+++ P ++ VI + NL GD +SD +A VGG+G+APGAN+ Sbjct: 207 -----QIEFNDRIVDACAMQLVLNPWQFDVIVSTNLFGDILSDQIAGLVGGLGMAPGANI 261 Query: 331 SDSVAVFEATHGTAPKYAGKDYVNPGSIILSAEMMLRHMGWIEAADLIITAMQKSVSAKR 390 + A+FEA HG+AP AGK NP +++L+A +ML H G A + A+ + + Sbjct: 262 GERAAIFEAVHGSAPDIAGKGMANPTALLLAAALMLEHKGLHGQAKFLRDAIDAVLGEES 321 Query: 391 VTYDFARLLEGATQVSCSGFGEVMIENM 418 R + S S +G+++IE + Sbjct: 322 -----GRTADLGGSTSTSKYGDLLIERI 344 >gi|152979772|ref|YP_001352927.1| tartrate dehydrogenase [Janthinobacterium sp. Marseille] Length = 358 Score = 106 bits (265), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 107/367 (29%), Positives = 156/367 (42%), Gaps = 57/367 (15%) Query: 31 IPFIMGDGVGVDVTPVMLKVVDAAVAKAYGGARKIHWMEIYAGEKATKLYGQDVWLPDET 90 I I GDG+G +V P L+V++AA A+ + A + ME E K +GQ +PD+ Sbjct: 6 IAVIAGDGIGNEVMPEGLRVLEAA-ARKFNLALEFTTMEWANCEYYLK-HGQ--MMPDDW 61 Query: 91 LEVLKQ----YLVSIKGPLSTPVGGGIRSLNVTMRQQLDLYVCLRPVRYFKGVPSPL--R 144 + L+ Y + P P + + R+ D YV LRPVR GVP PL R Sbjct: 62 RQQLEGFEAIYFGAAGMPALVPDHISLWGSLIKFRRDFDQYVNLRPVRLMPGVPCPLANR 121 Query: 145 EPEKTDMVIFRENSEDIYAGIEWQAGTPEVKKLIELLTREMGVKKLRFPETSALGIKPVS 204 +P D + REN+E Y+ + K E E + F S Sbjct: 122 KPGDIDFYVVRENTEGEYSAVG--------GKSFEGTEYEFVSQNAIF-----------S 162 Query: 205 REGTERLVRKAIQYAIDHDKPSVTLVHKGNIMKYTEGAFRDWGYALAGREFGAELIDDGP 264 R GT+R+++ A + A K +T K N G Y + E A D Sbjct: 163 RHGTDRILKYAFELAQSRPKKHLTSATKSN------GISISMPYWDSRVEAMAPSYADVH 216 Query: 265 WMRLKNPKTGRQIIIKDAITDAFFQQVLMRPAEYSVIATMNLNGDYISDAVAAQVGGIGI 324 W + D + ++ P + V+ NL GD +SD A G IGI Sbjct: 217 WDKYH--------------IDILCARFVLSPERFDVVVASNLFGDILSDLGPACTGTIGI 262 Query: 325 APGANMSDS---VAVFEATHGTAPKYAGKDYVNPGSIILSAEMMLRHMG-----WIEAAD 376 AP AN++ ++FE HG+AP GK+ NP +I S MML +G + A D Sbjct: 263 APSANLNPERKFPSLFEPVHGSAPDIFGKNIANPIGMIWSGAMMLDFLGNGDANYKAAHD 322 Query: 377 LIITAMQ 383 I+ A++ Sbjct: 323 AIMQAIE 329 >gi|152979812|ref|YP_001353859.1| 3-isopropylmalate dehydrogenase [Janthinobacterium sp. Marseille] Length = 356 Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 105/404 (25%), Positives = 174/404 (43%), Gaps = 67/404 (16%) Query: 31 IPFIMGDGVGVDVTPVMLKVVDAAVAKAYGGARKIHWMEIYAGEKATKLYGQDVWLPDET 90 I + GDG+G ++ +KV++A K + G A G LP+ T Sbjct: 3 IAILPGDGIGPEIMNQAVKVMNAL-------GEKFETETVPVGGAAYAAQGHP--LPEST 53 Query: 91 LEVLKQYLVSIKGPLSTPVGGGI-RSLN-----VTMRQQLDLYVCLRP-VRYFKGVPSPL 143 L+V K+ + G + + RSL + +R+ L L+ RP + Y + + Sbjct: 54 LKVAKEADAILFGAVGDFKYDTLERSLRPEQAILGLRKHLGLFANFRPAILYPELAGASS 113 Query: 144 REPE---KTDMVIFRENSEDIY----AGIEWQAGTPEVKKLIELLTREMGVKKLRFPETS 196 +PE D++I RE + DIY G+ P G +R+ E Sbjct: 114 LKPEIVSGLDIMIVRELTGDIYFGQPRGVRAAPDGP-------FKGEREGFDTMRYTEPE 166 Query: 197 ALGIKPVSREGTERLVRKAIQYAIDHDKPSVTLVHKGNIMKYTEGAFRDWGYALAGREFG 256 R+ A Q A K +T V K N+++ F+ W Sbjct: 167 -----------IRRIAHVAFQAAQKRGK-RLTSVDKANVLE----TFQFW---------- 200 Query: 257 AELIDDGPWMRLKNPKTGRQIIIKDAITDAFFQQVLMRPAEYSVIATMNLNGDYISDAVA 316 +++ D K + + + D Q++ P E+ V+ T N+ GD +SDA A Sbjct: 201 RDIVTD-------VHKEYQDVKLDHMYVDNAAMQLVRAPKEFDVVVTGNMFGDILSDAAA 253 Query: 317 AQVGGIGIAPGANM-SDSVAVFEATHGTAPKYAGKDYVNPGSIILSAEMMLRH-MGWIEA 374 G IG+ P A++ +++ ++E +HG+AP AGKD NP + ILS MMLR+ +G E Sbjct: 254 MLTGSIGMLPSASLDANNKGLYEPSHGSAPDIAGKDIANPLAQILSLAMMLRYSLGKTEQ 313 Query: 375 ADLIITAMQKSVSAKRVTYDFARLLEGATQVSCSGFGEVMIENM 418 AD I TA++ + T D G T+VS + G+ +++ + Sbjct: 314 ADRIETAVKSVLKQGLRTVDI--FEAGTTKVSTTQMGDAVVKAL 355 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 968,019 Number of extensions: 40156 Number of successful extensions: 119 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 113 Number of HSP's successfully gapped: 4 Length of query: 418 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 332 Effective length of database: 903,079 Effective search space: 299822228 Effective search space used: 299822228 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)