BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1204.p
         (517 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979789|ref|YP_001354210.1| virulence factor MviN [Janthino...   798   0.0  

>gi|152979789|ref|YP_001354210.1| virulence factor MviN
           [Janthinobacterium sp. Marseille]
          Length = 516

 Score =  798 bits (2061), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/516 (75%), Positives = 451/516 (87%)

Query: 1   MNLHKTLAAISGMTMLSRISGLVREILFARTFGASAYTDAFNIAFRIPNLLRRLFAEGAF 60
           MNLHKTLAA+SGMTM+SR++GL+REILFAR FGASAYTDAFNIAFRIPNLLRRLFAEGAF
Sbjct: 1   MNLHKTLAAVSGMTMVSRVTGLIREILFARAFGASAYTDAFNIAFRIPNLLRRLFAEGAF 60

Query: 61  SQAFVPILAEYKNRRGHDETKHLVDHVATALMWVMLITCVVGIVATPFVVYFIATGLQYD 120
           SQAFVPILAEYK+++G + TK LVDHVAT L+W ML+TCV+G++ +PF+VY IATGL+  
Sbjct: 61  SQAFVPILAEYKSQKGEEATKSLVDHVATVLIWTMLLTCVLGVIGSPFIVYLIATGLKTK 120

Query: 121 PDAFHASVLMTRIMFPYIGFMAFVALAGGILNTWKEFKIPAVTSVLLNVAFIVASLFVAP 180
            +AF ASV MTR+MFPYIGFMAFVAL+GGILNTW+EFKIPA T VLLN++FIVA+LF+AP
Sbjct: 121 SEAFDASVWMTRVMFPYIGFMAFVALSGGILNTWREFKIPAFTPVLLNLSFIVATLFLAP 180

Query: 181 FMAQPIYAMAFAVLVGGILQVAIQIPALIKIGMLPRLYWNPMLGLRDAGVKRVLQKMGPA 240
           ++ QPIYAMA AV+VGG+LQ+AIQ+PAL+KIGMLPR+  NP   L DAGV++VL KMGPA
Sbjct: 181 YLDQPIYAMAIAVVVGGVLQMAIQVPALLKIGMLPRVSRNPFASLGDAGVRKVLSKMGPA 240

Query: 241 VFAVSAAQISLMINTNIASRLQHGSVSWLTYADRLMEFPTALLGVALGTILLPSLSNAHA 300
           VFAVSAAQISLMINTNIASRL+ GSVSWL+YADRLMEFPTALLGVALGTILLPSLS A+ 
Sbjct: 241 VFAVSAAQISLMINTNIASRLESGSVSWLSYADRLMEFPTALLGVALGTILLPSLSKANF 300

Query: 301 ANDMEEYSALLDWGLRLTFMLAMPAAVGLATLSEPLTATLFHYGRFDALSVTMVGHALVA 360
             + EEYS+LLDWGLRLTF+LA+P AVGLAT+SEPLTATLFHYG+F+ LSV M   ALVA
Sbjct: 301 EGNTEEYSSLLDWGLRLTFLLALPCAVGLATISEPLTATLFHYGKFNELSVEMTSRALVA 360

Query: 361 YGVGLLGLILVKILAPGFYAKQDIRTPVMIAVGVLIATQAMNSLFVPLFSHAGLALSIGL 420
           YGVGL+GLILVKILAPGFYA+Q+I+TPV IA+GVLIATQ MN +FVP  +HAGLALSIGL
Sbjct: 361 YGVGLIGLILVKILAPGFYAQQNIKTPVKIAIGVLIATQLMNLVFVPWIAHAGLALSIGL 420

Query: 421 GACLNALCLFIGLRRRQIYVPRPGWGLFLVRLTGALLIMAGVALWMAGHFDWVALRAHPL 480
           GACLNA  L+ GL+RR IY   PGW  F +RL GAL +MA VALW AG FDWVALRA P 
Sbjct: 421 GACLNAAFLYWGLKRRGIYTALPGWRTFFIRLAGALFLMAAVALWTAGQFDWVALRATPF 480

Query: 481 LRIGALVLVLVVCTLAYFGPLFAMGFRLREFKRIAR 516
           +R+ AL++V+  C ++YFG L AMGFR R+FKRIAR
Sbjct: 481 MRVIALLIVMAACGISYFGALLAMGFRFRDFKRIAR 516


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.331    0.142    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,134,080
Number of extensions: 45983
Number of successful extensions: 242
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 430
Effective length of database: 899,382
Effective search space: 386734260
Effective search space used: 386734260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 132 (55.5 bits)