BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1203.p
         (285 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980788|ref|YP_001354211.1| hypothetical protein mma_2521 [...   379   e-106

>gi|152980788|ref|YP_001354211.1| hypothetical protein mma_2521
           [Janthinobacterium sp. Marseille]
          Length = 279

 Score =  379 bits (973), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/280 (64%), Positives = 228/280 (81%), Gaps = 3/280 (1%)

Query: 4   MTLTSLDYFASLVRQDDSIPLFESALTLGQDFYPEMDFAEEEMALDNLAAKLKQRLPSDA 63
           MT+ SL+YF++LV+QDDSIPLFE+AL + QD  P +D A  +  +D LA KLKQRLP DA
Sbjct: 1   MTIQSLEYFSTLVQQDDSIPLFEAALAIAQDAEPNLDLAASQAEVDTLAVKLKQRLPDDA 60

Query: 64  SQIQKLRMLNHFFFQEMAFAGNVNNYYDPDNSYIHRVISTRRGIPISLAVVYIELAQHIG 123
           S +QKLRMLNH+F+ E+ F+GNVN+YY+P+NSY+HRVI TRRGIPISLAV+Y+ELAQ I 
Sbjct: 61  STLQKLRMLNHYFYNELGFSGNVNDYYNPENSYLHRVIDTRRGIPISLAVLYMELAQQID 120

Query: 124 LDMKGVSFPGHFLMKLSVQSGEIVLDPMNGASLSRQELEERLEPFLAHHPEEDFGDELPL 183
           LD++G+SFPGHFLMKLSVQSG++VLDP NGASLSR+ELEER+EP++    E+DF D+  L
Sbjct: 121 LDVQGISFPGHFLMKLSVQSGQVVLDPFNGASLSREELEERVEPYIM---EQDFPDDFQL 177

Query: 184 AAYLRAAHPREILARMLRNLKAIFMESQRWQQVLDVQERLVILLPEEITEKRDRGLAYAN 243
            AYL AA PR+IL RMLRNLK +FM+ +RWQ++L+VQERL+ILLP EI E+RDRG+AY N
Sbjct: 178 TAYLDAASPRDILVRMLRNLKTLFMQQERWQRLLEVQERLLILLPHEIAERRDRGIAYMN 237

Query: 244 LGQAQAALEDLEAYLALRPHAEDAPNLREMLPDLREALRK 283
           L   QAAL+DLEAY+  RP+A D   LR   P LR+ + +
Sbjct: 238 LECPQAALQDLEAYVKHRPYAMDTAELRAHFPKLRDDISR 277


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 583,265
Number of extensions: 20909
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 203
Effective length of database: 917,867
Effective search space: 186327001
Effective search space used: 186327001
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)